Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3524 ATGGCATCTTCTTCAGACTCATGGGTGAAGGAATACAATGAAGCAGTGAAACTTGCTGATGATATCAGCGGTATGATCTCTGAGCGGAGCTTATTTCCCGCATCTGGACCGGAAACCCAGCGTCATTCATCTGCTATAAGAAGGAAGATTACAATATTGGGGACCCGGCTTGATAGCTTGCAATCCCTTTTGTCCAAGCTTCCCGGAAAGCAGCCCAAATCTGAGAAGGAGATGAATCGTCGCAAGGAAATGCTTGAAACTTTGAGATCCAAAGTTAATCAAATGGCTTCCACATTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTTGGGCCAGAAAGAAAACCAGATGCAATGACCAGAACTGTTGGCCTGGACAACAATGGACTTGTTGGACTTCAACGGCAAATTATGAAAGAACAAGATGTGGGCCTTGAGAAATTGGAGGAGACTGTACAAAGCACAAAACATATTGCATTGGCAGTGAATGAAGAGCTAGATCTACACACTAGACTCATTGATGACTTAGACCAGCATGTAGATGTCACAGATTCTCGGCTTAGGCGAGTGCAGAAGAACTTGGCAGTTTTAAATAAGCGAACCAAGGGTGGTTGCTCCTGCCTGTGCATGCTTTTATCAGTGATTGTTGTAGTGGTTTTGGTTGTTGTCATTTGGCTATTGGTCTAA 690 0.4362 MASSSDSWVKEYNEAVKLADDISGMISERSLFPASGPETQRHSSAIRRKITILGTRLDSLQSLLSKLPGKQPKSEKEMNRRKEMLETLRSKVNQMASTLNMSNFANRDSLLGPERKPDAMTRTVGLDNNGLVGLQRQIMKEQDVGLEKLEETVQSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVIVVVVLVVVIWLLV 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3524 229 Gene3D - 138 200 - -
Ssu6g3524 229 PANTHER SYNTAXIN 1 226 IPR045242 -
Ssu6g3524 229 Coils Coil 146 166 - -
Ssu6g3524 229 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 136 198 IPR000727 -
Ssu6g3524 229 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 226 - -
Ssu6g3524 229 SUPERFAMILY SNARE fusion complex 127 197 - -
Ssu6g3524 229 CDD SNARE_Qc 139 196 - -
Ssu6g3524 229 Pfam SNARE domain 173 224 IPR000727 -
Ssu6g3524 229 SMART tSNARE_6 131 198 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3524 Ssu-Chr6 78402643 78403962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3524 1 229 SNARE and Associated Proteins AT1G16240 70.870 1.82e-117 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3524 K08503 - gmx:100782666 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3524 6 78402643 78403962 Ssu6g3524 6 78402643 78403962 ECH
Ssu9g1010 9 40671973 40673802 Ssu6g3524 6 78402643 78403962 PCT