Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3521 ATGTTTCTGCAGGATCTTCTGCAGCGTTGCAATACCAATCGACCTGGCAATGAAGTAAGACCACCAGTGGTTTCTGGTGTGATGCCTAGCAGTCACTTGGGGAGAAATTCATCTTCCTTAGTATTGCCTAAGGTTGAACACCCGCAGTTCAAAGTTGATGCAGGATCAAATGGGTCTTCTTATATGATGCAAGTCCAAGCAAATTCATCAGCAAACCAGCCTTTGGTGAATGCTCCGACATGGTCTATACAGACTCAAGCTGCTTCATTAGCTAGAAGCGCATCAGAAAACAAGGGGCCTGCTCATAACCCCGTCAAGGTTGAAGGAACACCTGGTGTAACTGTATCAAGGGCAGGGCCACAAATAACAACAGATCCCAGCTTTAGACCATTTATCACTCAAACAGCCCCTGGAAATTTGCCTAGTGTTCACCAGCCATTGCAGGCCACGAACATTGTTCAGCCTCCTTTGATTCCTAGTCACGCTGATATTGCAAAGATTGTACAGAAAGTGTTACAACCAAAGCTTCCTGACTATCCCATGTGGACTCCTCCATCAAGGGACTATATGAATAAGGCTTTGACATGTCAGATGTGTGAGCTCAGTGTCAATGAGGTTGATACTGTgcttctctgtgatgcttgtgaAAAGGGATTTCACTTAAAGTGCCTGCAGCCATCGGTCTTGAGAGGAATTCATAATAGAGTTGATTGGCACTGTATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTTTGCCTCCCAAATATGGTCGTGTCATGAGGTCCTCAAACACACCACCAAAATTGCCCTCTAATACAGGCGGTATTCAACCGTGTTCTGAGAAGAAAGCAGAGAACATAGATCCAAAGGTCATCCTACAGACGTTAACAACAAATGGGAGCTCTGTTTCTACTGTTTCCAGTGGCAATCATAATGTTCAGCTGCCATATGACTTAAAGATCCCTGATACCAAAGATATGCAAGGGATTGACACTTCATCCAGCATTGAAGCTATTGATAGGAAGCCTGATCCAAACAACTCTATAAAATCTCTTAGTGCAACTTCTAGTCCTTCCACTGGCTTGCTAGGTGGAAGTTCTGCTCAACAAATAAATTCTAAGGTTTTGACTGGTAAAGAGACTTCAGAATCTGAGTCTCTTCCTAAATTATCTGAGCCGGCTAAATGTGAAAATTTGCAATCATCACAAGATTTTCAAGTTGAACAGACAATGTCACAAGACAATGCTGAAGTATCATTAGAGAAACTTGTTGACAGTAATACTATGAGTAATAAACAGAAGGAATCTCATGGTGGAGAAAATTTAACTTACGATATCAAGCGTGATGACCAAGATGCTGCACTTGCAAATTTTGTTGGAACTTCTGGAACTAATACTGAAGGTAGACAGCACTCTGCATTACCTTCAGATAGCTCACATGATGTAGAATGGATCGGTGATGTAGTACAACTTGTAGATGAGAAAAAGTTTTACCAATCTTGCTGTGTTGATGGAGTAACATACAGGGTGCAGGGTCATGCTCTTTTCCCCACCAGCGATGGCAAACTAACTCCTTCTAAACTCCAGtctATGTGGGAAGACTGCAAAACTGGGTTAAAGTGGGTTAAGGTGACAAAGTGCTACTTTCCTGATGATTTGCCAGGGAATATTGGTCATCCTTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTAGCTCTATTCGAGGCCCATGTGAAGTCCTCCCATCTGATAAATTTAAACAAGAAAATGACAGGCGATGTCAATTAGGAACTGAGGAAAGTTCCAGAGTACAGCGCATTTTCCTTTGCAGGTTTGTTTCTGTATGTTTATCCATCATTCTAgagagtttttattttattttgttttactttgtgcatgtttcattcaatttatacaattttttgtgTTTGGAATGCAGCCATCAAGTAGAAAATATGATTACAATTTATCACATGGTATTCTTGGTAGAAAATGATAGAAAACAGGGAGATGAAAAGAAGAGTTGA 2052 0.3977 MFLQDLLQRCNTNRPGNEVRPPVVSGVMPSSHLGRNSSSLVLPKVEHPQFKVDAGSNGSSYMMQVQANSSANQPLVNAPTWSIQTQAASLARSASENKGPAHNPVKVEGTPGVTVSRAGPQITTDPSFRPFITQTAPGNLPSVHQPLQATNIVQPPLIPSHADIAKIVQKVLQPKLPDYPMWTPPSRDYMNKALTCQMCELSVNEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPKLPSNTGGIQPCSEKKAENIDPKVILQTLTTNGSSVSTVSSGNHNVQLPYDLKIPDTKDMQGIDTSSSIEAIDRKPDPNNSIKSLSATSSPSTGLLGGSSAQQINSKVLTGKETSESESLPKLSEPAKCENLQSSQDFQVEQTMSQDNAEVSLEKLVDSNTMSNKQKESHGGENLTYDIKRDDQDAALANFVGTSGTNTEGRQHSALPSDSSHDVEWIGDVVQLVDEKKFYQSCCVDGVTYRVQGHALFPTSDGKLTPSKLQSMWEDCKTGLKWVKVTKCYFPDDLPGNIGHPCISEVNEVYESNSDRTEMASSIRGPCEVLPSDKFKQENDRRCQLGTEESSRVQRIFLCRFVSVCLSIILESFYFILFYFVHVSFNLYNFLCLECSHQVENMITIYHMVFLVENDRKQGDEKKS 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3521 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 257 IPR013083 -
Ssu6g3521 683 MobiDBLite consensus disorder prediction 375 394 - -
Ssu6g3521 683 CDD BAH 505 619 - -
Ssu6g3521 683 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 13 621 - -
Ssu6g3521 683 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 13 621 - -
Ssu6g3521 683 MobiDBLite consensus disorder prediction 259 281 - -
Ssu6g3521 683 MobiDBLite consensus disorder prediction 94 126 - -
Ssu6g3521 683 ProSiteProfiles BAH domain profile. 506 633 IPR001025 GO:0003682
Ssu6g3521 683 MobiDBLite consensus disorder prediction 327 368 - -
Ssu6g3521 683 MobiDBLite consensus disorder prediction 264 279 - -
Ssu6g3521 683 Gene3D - 476 623 IPR043151 -
Ssu6g3521 683 MobiDBLite consensus disorder prediction 12 31 - -
Ssu6g3521 683 MobiDBLite consensus disorder prediction 300 314 - -
Ssu6g3521 683 MobiDBLite consensus disorder prediction 300 368 - -
Ssu6g3521 683 ProSiteProfiles Zinc finger PHD-type profile. 193 246 IPR019787 -
Ssu6g3521 683 SUPERFAMILY FYVE/PHD zinc finger 186 251 IPR011011 -
Ssu6g3521 683 ProSitePatterns Zinc finger PHD-type signature. 196 243 IPR019786 -
Ssu6g3521 683 SMART PHD_3 195 244 IPR001965 -
Ssu6g3521 683 Pfam PHD-finger 196 244 IPR019787 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu6g3521 PHD 1.5e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3521 - - gmx:100807139 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3521 6 78371893 78375108 Ssu6g3521 6 78371893 78375108 ECH