Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3515 atggcaAATAGGTGCTTAGTGTTTGCAATGTTAGTGGTTGCTGGCATTGTAGTGCTAGCGAACTTGCCAGCTGGCATATCAGCTCAAACTGAATGCGGTGGTGATTTTTCCTCCATTATAACCAAATGTAACAGTTTCGTCCAAAGGGAAGGGCCAGAGATTCCACCATCACAAGACTGCTGCAACGTAGTGAAAAATGTTGATGTCCCCTGCCTCTGCAAATATGTCACCCCTGAAATTGAGGCTCAGATCAGCCTGGAAAAAACCATTTATGTAGCCAGGACTTGTGGATGCTCAGTTCCTGAAGGAACTAAGTGTGGAAATTCATTAGATTGTGGTGGGAAGAATATTGCATACACAATAACTGTTGGTCGATATGGCAAAGTAACATTTAGAACAATTCAAGCTGCGATTGATTCCATAAGGAGCAATAATGGCCGATGGGTCAGGATTCACATAAAAGCCGGCTTGTACATCGAGGGCAGGGGAGGTTCTGCGGAGTGGGAGCTCCGGCGGAGTTCTGAGAATTGCTTGATCAACGCTGTAGGGGGAAATAGATCTTCACCAGGTTATGTCATAGCTCAAGGACGAAATTCATCAAATGACCCAAGTGGTTTTGTATTTAAAGGGGGTTCCCTTACAGGGAACGGTAAAGTGAATTTAGGAAGAGCATGGCGTCTTTACTCTAGAGTTATATTCCATGGaacaaacttttcttttgtgGTAACTCCTCAAGGATGGAATGCTTGGATATATGTTGGCCAAGaGAGTAAGTTCACTTATGCTGAAGTTGACTGTAAAGGACCAGGAGCTGATACTTTGAAGCGTGTTACTTGGATGAAGAAGCTAAATCATTCACAGCTGGAAGAATTTTCTTTAgcttcttttattaataaagataGATGGCTTGACAACTTACCAACTATCtcctag 933 0.4116 MANRCLVFAMLVVAGIVVLANLPAGISAQTECGGDFSSIITKCNSFVQREGPEIPPSQDCCNVVKNVDVPCLCKYVTPEIEAQISLEKTIYVARTCGCSVPEGTKCGNSLDCGGKNIAYTITVGRYGKVTFRTIQAAIDSIRSNNGRWVRIHIKAGLYIEGRGGSAEWELRRSSENCLINAVGGNRSSPGYVIAQGRNSSNDPSGFVFKGGSLTGNGKVNLGRAWRLYSRVIFHGTNFSFVVTPQGWNAWIYVGQESKFTYAEVDCKGPGADTLKRVTWMKKLNHSQLEEFSLASFINKDRWLDNLPTIS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3515 310 CDD nsLTP_like 32 97 IPR044741 -
Ssu6g3515 310 Pfam Probable lipid transfer 15 106 IPR016140 -
Ssu6g3515 310 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 104 160 - -
Ssu6g3515 310 SMART aai_6 43 106 IPR016140 -
Ssu6g3515 310 Gene3D - 172 309 IPR012334 -
Ssu6g3515 310 PANTHER PECTINESTERASE 104 160 - -
Ssu6g3515 310 Pfam Pectinesterase 176 299 IPR000070 GO:0030599|GO:0042545
Ssu6g3515 310 SUPERFAMILY Pectin lyase-like 117 306 IPR011050 -
Ssu6g3515 310 Gene3D - 29 103 IPR036312 -
Ssu6g3515 310 Gene3D - 114 162 IPR012334 -
Ssu6g3515 310 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 40 101 IPR036312 -
Ssu6g3515 310 PANTHER PECTINESTERASE 175 309 - -
Ssu6g3515 310 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 175 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3515 Ssu-Chr6 78158358 78161473 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3515 137 303 Carbohydrate Esterase AT1G05310 35.465 3.14e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3515 - - gmx:100787453 215.312