Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3513 ATGAGTACGAGAATGGCAACTAGGTGCTTAGCGTTTGCAATGTTAGTGGTTGCTGGCATTGTAGTGCGAGGGAACTTGCCAGCTGGCATATCAGCTCAAACCGAATGCGGTGGTGATTTTTCCTCCATTATAACCACATGTAACGCTTTCTTCCAAAAGCAAGGGCCAGAGATTCCACCATCGCAAAGATGCTGCGAGGTGTTGAAAAATGTTGATGTCCCCTGCCTCTGCAAATATATTACCCCTCCAATTGAGGCTCAGATCAGCGTGGAAAAAGCCATCTATGTAGCCAGGACTTGTGGTTGCTCAGTTCCTGCCGGAATTAAGTGTGGAAGTTCATTAGATTGTGGTGGGAAGAATATTGCATACACCATGACTGTTGGTGGATATGGCAAAGGAACATTCAGAACAATTCAAGCTGCCATCGATTCTATAAAGAACAACAATGATCGATGGGTCAAAATTCACATAAAAGCCGGTTTATACATAGAAAAGGTTTATATTCCCCAAAAAAAGCCATGCATTATTTTAGAAGGAGAGGGTAGCCAATCTACAATCATAAGTTTCTGGGACCACCAAAAAACAGACATTAGTGCTACATTCACTTCATTGCCACCCAATGTAGTTGTGACTGGCATTGCTTTCAAGAACTCGTATAATAGTGTGAAACAATCATATAAATTGGATGATAGGAGTAGTGAACCAATTAAACCAGCGGCGGCAGCAAGAGTATACGGAgacaaatcttttttctttaagtgtaattttatagGTTATCAAGACACTTTATTTGATGTAATGGGACGCCATTATTTTAAAGATTGCTACATTCAAGGTGAAgtggattttatttttggtggtGGACAATCTTATTATGAGAATTGCTTGATCAATGTAGTGGGAACAAATAGCTCTGTACCAGGTTTTGTCACAGCTCAAGGACGACTTTCATTAGATGATCCAAGTGGTTTTGTATTTGAAGGGGGTTCCCTTTTTGGTGTTGGTAAAGTGAATTTAGGAAGAGCATGGCGTCCTTACTCTAGAGTTATATTCCATGGAACAAACTTTTCTTCTGTGGTGACTCCTCAAGGATGGAATGCTTGGAGATATATTGGCCAAGaGAGTAAGTTCGCTTATGCTGAAGTTGACTGTAAAGGACTAGGAGCTGATACTTCGAAGCGTGTTACCTGGATGAAGAAGCTAAATCATTCACAACTAGAAGAATTTTCTTTAACgtcttttattaataaagataGATGGGTTGACAACTTACCAACTATCtcctag 1287 0.3846 MSTRMATRCLAFAMLVVAGIVVRGNLPAGISAQTECGGDFSSIITTCNAFFQKQGPEIPPSQRCCEVLKNVDVPCLCKYITPPIEAQISVEKAIYVARTCGCSVPAGIKCGSSLDCGGKNIAYTMTVGGYGKGTFRTIQAAIDSIKNNNDRWVKIHIKAGLYIEKVYIPQKKPCIILEGEGSQSTIISFWDHQKTDISATFTSLPPNVVVTGIAFKNSYNSVKQSYKLDDRSSEPIKPAAAARVYGDKSFFFKCNFIGYQDTLFDVMGRHYFKDCYIQGEVDFIFGGGQSYYENCLINVVGTNSSVPGFVTAQGRLSLDDPSGFVFEGGSLFGVGKVNLGRAWRPYSRVIFHGTNFSSVVTPQGWNAWRYIGQESKFAYAEVDCKGLGADTSKRVTWMKKLNHSQLEEFSLTSFINKDRWVDNLPTIS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3513 428 Gene3D - 118 426 IPR012334 -
Ssu6g3513 428 Gene3D - 33 107 IPR036312 -
Ssu6g3513 428 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 38 110 IPR036312 -
Ssu6g3513 428 SUPERFAMILY Pectin lyase-like 121 424 IPR011050 -
Ssu6g3513 428 PANTHER PECTINESTERASE 108 427 - -
Ssu6g3513 428 Pfam Pectinesterase 125 417 IPR000070 GO:0030599|GO:0042545
Ssu6g3513 428 CDD nsLTP_like 47 101 IPR044741 -
Ssu6g3513 428 Pfam Probable lipid transfer 20 110 IPR016140 -
Ssu6g3513 428 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 108 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3513 Ssu-Chr6 78065390 78069074 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3513 102 374 Carbohydrate Esterase AT2G19150 45.848 2.95e-74 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3513 - - gmx:100787453 468.003