Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3508 ATGCGGAGGGGCAGAGGAGGAGCCACGGCGGCGGAGGTGAACGGATCCGTTTTAAAGGAGCCTCGGTACCGGGGCGTTCGGAAGAGACCGTGGGGGAGGTTCGCGGCGGAGATCAGGGACCCGCTGAAGAAAGCGAGGGTGTGGCTGGGAACCTTCGACTCCGCCGAGGAAGCTGCTCGAGCCTACGACGCTGCCGCTCGGACTCTCCGAGGTCCCAAGGCCAAGACCAATTTCCCTCTCTCGCCCTTCTGCTACCAGCACCCCGCCGCCGATCCTTTCTTCTACGCGGGTttccacaacaacaacaacaaccttaaCAACCCCCAGAGGCCCACCTCGAGTGGCATGAGCAGCACCGTTGAGTCCTTCAGTGGGCCCCGCCCTCCCACCGTGACAGCTGCGACGCCGTTTTTGACCGCCACGCGGAGATACCCGCGCACTCCCCCTCTTGTCCCCGAAGACTGCCACAGCGACTGCGACTCTTCCTCCTCCGTCGTCGACGACGGCGACAACATCGTCTCCTCGTCGTTTCGACCTCCCTTGCCGTTCGATCTCAACGCGCTGCCGTTTGATGATGCTGCCGCCGCGGATGACGATCTTCGCTGCACCGCGCTTTGCCTCTGA 624 0.6186 MRRGRGGATAAEVNGSVLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAARTLRGPKAKTNFPLSPFCYQHPAADPFFYAGFHNNNNNLNNPQRPTSSGMSSTVESFSGPRPPTVTAATPFLTATRRYPRTPPLVPEDCHSDCDSSSSVVDDGDNIVSSSFRPPLPFDLNALPFDDAAAADDDLRCTALCL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3508 207 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Ssu6g3508 207 PANTHER ETHYLENE RESPONSE FACTOR 12 189 - -
Ssu6g3508 207 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Ssu6g3508 207 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Ssu6g3508 207 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Ssu6g3508 207 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Ssu6g3508 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 189 - -
Ssu6g3508 207 MobiDBLite consensus disorder prediction 104 132 - -
Ssu6g3508 207 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Ssu6g3508 207 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Ssu6g3508 207 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3508 Ssu-Chr6 78019423 78020046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3508 1 207 AP2-EREBP Transcription Factor Family AT1G50640 60.173 1.05e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu6g3508 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3508 K09286 - gmx:100803943 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3508 6 78019423 78020046 Ssu6g3508 6 78019423 78020046 ECH
Ssu9g0993 9 40461733 40462362 Ssu6g3508 6 78019423 78020046 PCT