Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3498 aTGGAACCCACTTGGAATGATGCCATTGTGAAGGGTAATTCTTCTGATCCAGTCATGTCGTTTAGAGGGACGCCACTTGTCGTGGATGAGCTTGATTTCTTTGctgagaagagaaaagagagtgaAGAAGATATCGATGATCAAAGTATGGAGCTTCATGTAGATACTAGCTTAGATCTGCTTACGAAGAATAATACCGGTAGCAACAGATCAACAGAAGAAGAAGCGGCATTGGAAACTATGGATGATAAGAGAAATGAGTTTGTAGCTTTGGTAACTGAATTGCACCAAATGAATGCTGAAAATCAACGTTTAAGAGAGTTGGTTGATCAGGTGAACGATAACTACAAAGCCCTACGCATGCAACTTATCAAGCTAAGGCAGAAGCAGCATAGCCATgggAACAAGGGAGTGATAGGGGAGAAAGAAGATATGGTTCCAAGGTCATTTTTGGACATGGGTGTTGCTGAGAAGGACGAGCCTTCCCAGCAATCCTCAGAGGGAAAACTGAGAGAAAGCAAAAGCATGGTTGACATGACGGATCAGTGCAAGGGACACGGCAAAGATATTGTTGTTTTGGAGGCAGATAAGTTGGATTCTGGAAATGAAAGTTCAAAAGCCAGAATGGAAGGGAGGCACGCTGACCAAGAATTCTCTAACAAAGTTCCTAGATTGGATCAAGCATCGGAAACCATGTCAATGATCAAGAAAGCTCGTGTATCAGTTCGAGCGAGATCAGATTCTTCAATGATTGCAGATGGATGCCAATGGCGAAAGTATGGGCAGAAGATGGCGAAAGGGAATCCTTGTCCAAGAGCCTATTATCGTTGCACAATGAGTACTGGCTGTCCAGTACGGAAACAAGTACAAAGGTGTGCTGAAGATCGAAGTGTGCTGATCACAACATATGAAGGGCAGCATAACCATCCACTCCCTCCCACAGCCCAGGCAATGGCATCCACCACATCTGCAGCCGCCTCAATGCTTCTTTCTGGATCAATGCCCAGCTCAGATGGCCTCATTAATCCAAGCATATTAGAAAGTGCTTCACTTCCCTGCTCTCAAAACATGGCAACTCTCTCTGCCTCGGCCCCATTTCCAACCATCACACTGGACCTCACTCAAAATGCTACCAATTCCTCACAGCTACAAAGGGAACCACAGGGCCAACTTAACCTCCTGTCTCCACTTTTGGCTCATAAGTTTATGTCAGTCCCAAAAATATTTGGACAGGCACTGTGTGATCAAACTATGCTTGCTGGCTTACACGAGTCTCAGGGAATGGACACAGCTTCATCTTTTGCTAACACATTCAATGCAGCTACTGCTGCTGTCACAGCAGACCCCAATTTCACTGCAGCTCTTGTGGCCGCTATAACATCTGTCATAGGGAGTTCACATTCAAACACCAATGGCACCAATAATACAAGCGGAGATGAGCAGTGCAATAATAATGCATAA 1461 0.4422 MEPTWNDAIVKGNSSDPVMSFRGTPLVVDELDFFAEKRKESEEDIDDQSMELHVDTSLDLLTKNNTGSNRSTEEEAALETMDDKRNEFVALVTELHQMNAENQRLRELVDQVNDNYKALRMQLIKLRQKQHSHGNKGVIGEKEDMVPRSFLDMGVAEKDEPSQQSSEGKLRESKSMVDMTDQCKGHGKDIVVLEADKLDSGNESSKARMEGRHADQEFSNKVPRLDQASETMSMIKKARVSVRARSDSSMIADGCQWRKYGQKMAKGNPCPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTAQAMASTTSAAASMLLSGSMPSSDGLINPSILESASLPCSQNMATLSASAPFPTITLDLTQNATNSSQLQREPQGQLNLLSPLLAHKFMSVPKIFGQALCDQTMLAGLHESQGMDTASSFANTFNAATAAVTADPNFTAALVAAITSVIGSSHSNTNGTNNTSGDEQCNNNA 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3498 486 Gene3D WRKY domain 236 313 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g3498 486 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 10 473 - -
Ssu6g3498 486 ProSiteProfiles WRKY domain profile. 246 312 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g3498 486 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 10 473 IPR044810 GO:0003700
Ssu6g3498 486 Coils Coil 95 129 - -
Ssu6g3498 486 SUPERFAMILY WRKY DNA-binding domain 244 312 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g3498 486 SMART WRKY_cls 251 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g3498 486 MobiDBLite consensus disorder prediction 162 176 - -
Ssu6g3498 486 MobiDBLite consensus disorder prediction 466 486 - -
Ssu6g3498 486 Pfam WRKY DNA -binding domain 253 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g3498 486 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3498 Ssu-Chr6 77915233 77918322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3498 27 474 WRKY Transcription Factor Family AT1G62300 46.804 5.53e-115 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu6g3498 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3498 - - gsj:114372133 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0841 9 36948007 36950275 Ssu6g3498 6 77915233 77918322 PCT
Ssu9g0982 9 39829856 39833676 Ssu6g3498 6 77915233 77918322 PCT