Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3497 ATGCGCGAGGCAATGTGTTTGGACTTGATGGATCAGTATCAGGTAGGGAGACCTCCTGTGAAGCTCCATCAAGGATGCCTCGGTCACGCTCTGTTCAAAATTGAGAGGCCGTTTGTGTGTGCTGTCGATGATTGTCAGGCAAGTTACAGAAGGAAGGACCACCTGGCTCGTCACCTTCTACAGCATCAAGGGAAGACTTTTAAGTGCCCTGTTGAGAATTGCAATGCCGAGTTCTCTTTGCAAGGCAATATGAAAAGACATGTTGAGGAGCTTCATGACGACAGTTCTACCTCTACTATTGACACAAGTCACAAACAGCATGTGTGTCCAGAGATTGGCTGTGGAAAGGTTTTCAGATATGAATCACAGCTACAGAAGCATGAAGATTCTCATGTTAAGCTGGAGTCAGTAGATGTCGTATGCTTAGAACCTGGTTGCATGAAACATTTCACTAATGTCCAGTGCCTTCATGCCCATGTTAAGTCCTCCCATCAATATATGACCTGTGACATTTGTGGGACTAACCAACTGAAGAAGAATATTAAACGTCACCTTCGTTCACATGAAGCCGGCAGTACATCAGAGACCTTTCAATGCGAGTTTAAGGGTTGTAGCTGCACATTTTCAAGAAAATCTAATCTTGATAAGCATAAGAAGGCTGTGCACTTTAAGGAAAAGCCTTTTGTGTGTGGGTTTCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGAGATAATCATGAAAAAACTGCTAAACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATCAAGAGTTCAGATCAAGGCCAAGGGGAGGGAGGAAGAGAAAATGTCCTACTGTTGAAATGCTAATTAGGAAGAGGGTTACCCCACCTAGTCAATTGGAGAATTGGTTATTTATGCAGGATAGAGAGTAG 924 0.4329 MREAMCLDLMDQYQVGRPPVKLHQGCLGHALFKIERPFVCAVDDCQASYRRKDHLARHLLQHQGKTFKCPVENCNAEFSLQGNMKRHVEELHDDSSTSTIDTSHKQHVCPEIGCGKVFRYESQLQKHEDSHVKLESVDVVCLEPGCMKHFTNVQCLHAHVKSSHQYMTCDICGTNQLKKNIKRHLRSHEAGSTSETFQCEFKGCSCTFSRKSNLDKHKKAVHFKEKPFVCGFPDCGMRFAYKHVRDNHEKTAKHVFTLGDFEEADQEFRSRPRGGRKRKCPTVEMLIRKRVTPPSQLENWLFMQDRE 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3497 307 SMART c2h2final6 67 92 IPR013087 -
Ssu6g3497 307 SMART c2h2final6 139 164 IPR013087 -
Ssu6g3497 307 SMART c2h2final6 107 131 IPR013087 -
Ssu6g3497 307 SMART c2h2final6 197 222 IPR013087 -
Ssu6g3497 307 SMART c2h2final6 167 188 IPR013087 -
Ssu6g3497 307 SMART c2h2final6 38 62 IPR013087 -
Ssu6g3497 307 SMART c2h2final6 228 254 IPR013087 -
Ssu6g3497 307 Gene3D Classic Zinc Finger 35 63 - -
Ssu6g3497 307 ProSitePatterns Zinc finger C2H2 type domain signature. 40 62 IPR013087 -
Ssu6g3497 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 136 IPR013087 -
Ssu6g3497 307 SUPERFAMILY beta-beta-alpha zinc fingers 35 64 IPR036236 -
Ssu6g3497 307 ProSitePatterns Zinc finger C2H2 type domain signature. 69 92 IPR013087 -
Ssu6g3497 307 SUPERFAMILY beta-beta-alpha zinc fingers 65 93 IPR036236 -
Ssu6g3497 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 227 IPR013087 -
Ssu6g3497 307 Pfam Zinc finger, C2H2 type 107 131 IPR013087 -
Ssu6g3497 307 Pfam Zinc finger, C2H2 type 38 62 IPR013087 -
Ssu6g3497 307 Pfam Zinc finger, C2H2 type 197 222 IPR013087 -
Ssu6g3497 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 67 IPR013087 -
Ssu6g3497 307 Gene3D Classic Zinc Finger 96 166 - -
Ssu6g3497 307 Gene3D Classic Zinc Finger 64 95 - -
Ssu6g3497 307 PANTHER ZINC FINGER PROTEIN 34 295 - -
Ssu6g3497 307 Gene3D Classic Zinc Finger 229 251 - -
Ssu6g3497 307 SUPERFAMILY beta-beta-alpha zinc fingers 102 133 IPR036236 -
Ssu6g3497 307 ProSitePatterns Zinc finger C2H2 type domain signature. 109 131 IPR013087 -
Ssu6g3497 307 ProSitePatterns Zinc finger C2H2 type domain signature. 141 164 IPR013087 -
Ssu6g3497 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 97 IPR013087 -
Ssu6g3497 307 ProSitePatterns Zinc finger C2H2 type domain signature. 199 222 IPR013087 -
Ssu6g3497 307 Gene3D Classic Zinc Finger 167 228 - -
Ssu6g3497 307 SUPERFAMILY beta-beta-alpha zinc fingers 179 236 IPR036236 -
Ssu6g3497 307 ProSitePatterns Zinc finger C2H2 type domain signature. 230 254 IPR013087 -
Ssu6g3497 307 PANTHER - 34 295 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3497 34 257 C2H2 Transcription Factor Family AT1G72050 51.449 6.14e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu6g3497 zf-C2H2 0.011 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3497 K09191 - gmx:100801812 525.013