Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3492 ATGCACATAGTAATACCCATACTCACactcacactcacacacacaatTTCGTGGTCAATGGCGAATTTGCCCCAATCCATCTCCATGAGCGGCGCGTCGTTTGGAGTTCCCTCTGCCTCTGCCACCAAGGATCGCAGGATGGCCTCTGTCGAACACCTTGTTCTCGAACTCAGCAACCCTGATCTCCGAGAAAACGCTCTTCATGAACTCTCCAAGaagaGAGAGTTATTTCAGGATCTTGCTCCATTATTGTGGAATTCTTTTGGTACTATGGCAGCACTTTTGCAGgAAATAGTTTCAATATACCCTGTTATTTCACCACCAAACCTTACTCCAGCACAATCAAATCGAGTGTGCAACGCTCTTGCTCTTCTTCAGTGTGTGGCATCTCACCTTGATACAAGGATGCAATTCCTCAatgCTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACTAGTAAGTCAAGACCATTTGAGTATTTAAGGCTTACAAGTCTTGGAGTCATTGGTGCCTTGGTGAAGGTTGATGATACAGAAGTTATAAGTTTCCTTCTTTCAACAGAGATTATTCCGCTGTGCCTGCGCAGTATGGAAATGGGCAGCGAATTGTCAAAAACTGTTGCAACCTTTATAGTTCAAAAAATTCTGTTGGACGAAATTGGTTTGAAATATATTTGTACTACAGCAGAGCGCTTTTATGCAGTAGGTCGAGTTTTGGGAAACATGGTGGCAACTCTTGTTGAGCAACCTTCATGTCGTCTTTTGAAGCATATTATTCGTTGTTATCTTCGTCTGTCAGATAATCAGAGTGCTTGCGAGGCATTAAGAACCTGTCTTCCAGACATGTTAAGAGATGCTACATTCAGTAGTTGCCTTCGTGAAGACCCAACAGCTAGGAGGTGGCTACAGCAGCTGCTTCATAATATAGGAGTCAATCGGGCACCTGCACTACAAGGTGGAGGAGGATTCGATCATATGATGGTGTCGTGA 996 0.4237 MHIVIPILTLTLTHTISWSMANLPQSISMSGASFGVPSASATKDRRMASVEHLVLELSNPDLRENALHELSKKRELFQDLAPLLWNSFGTMAALLQEIVSIYPVISPPNLTPAQSNRVCNALALLQCVASHLDTRMQFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRSMEMGSELSKTVATFIVQKILLDEIGLKYICTTAERFYAVGRVLGNMVATLVEQPSCRLLKHIIRCYLRLSDNQSACEALRTCLPDMLRDATFSSCLREDPTARRWLQQLLHNIGVNRAPALQGGGGFDHMMVS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3492 331 SUPERFAMILY ARM repeat 55 292 IPR016024 -
Ssu6g3492 331 Gene3D - 42 312 IPR011989 -
Ssu6g3492 331 PANTHER BNAA05G20110D PROTEIN 20 329 - -
Ssu6g3492 331 Pfam Cell differentiation family, Rcd1-like 53 311 - -
Ssu6g3492 331 PANTHER UNCHARACTERIZED 20 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3492 Ssu-Chr6 77824855 77830379 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Ssu6g3492 Rcd1 2.4e-128 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3492 K12606 - gmx:100801266 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0976 9 39672028 39685470 Ssu6g3492 6 77824855 77830379 PCT