LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g3482	ATGACTGGAGAGGCAGCAGTGAACCCAAAAGCTTACCCTTTGGCCGATGCGCAGCTCACAATAACAATACTCGATCTTGTGCAACAAGCTGCCAACTACAAGCAACTCAAAAAGGGTGCTAACGAAGCAACCAAGACACTCAACAGAGGCATTTCTGAGTTCGTTGTGATGGCCGCAGACACTGAGCCTCTTGAGATTCTTCTCCATCTTCCTCTGCTTGCTGAGGATAAGAATGTTCCCTATGTATTCGTCCCATCAAAACAAGCACTTGGGCGAGCATGTGGAGTCACACGGCCAGTGATTGCATGTTCTGTAACAACTAATGAAGGAAGTCAACTGAAATcccaaattcaacaactaaagGATGCTATTGAGAAGCTGTTAATCTGA	390	0.4385	MTGEAAVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI	129

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g3482	129	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	24	112	IPR004038	-
	Ssu6g3482	129	Gene3D	-	2	129	IPR029064	-
	Ssu6g3482	129	PRINTS	High mobility group-like nuclear protein signature	9	22	IPR002415	GO:0003723\|GO:0005730
	Ssu6g3482	129	PRINTS	High mobility group-like nuclear protein signature	83	95	IPR002415	GO:0003723\|GO:0005730
	Ssu6g3482	129	PRINTS	High mobility group-like nuclear protein signature	39	49	IPR002415	GO:0003723\|GO:0005730
	Ssu6g3482	129	PRINTS	High mobility group-like nuclear protein signature	22	37	IPR002415	GO:0003723\|GO:0005730
	Ssu6g3482	129	ProSitePatterns	Ribosomal protein L7Ae signature.	74	91	IPR004037	GO:0042254\|GO:1990904
	Ssu6g3482	129	PRINTS	Ribosomal protein L7A/RS6 family signature	55	68	IPR018492	-
	Ssu6g3482	129	PRINTS	Ribosomal protein L7A/RS6 family signature	71	81	IPR018492	-
	Ssu6g3482	129	PRINTS	Ribosomal protein L7A/RS6 family signature	36	50	IPR018492	-
	Ssu6g3482	129	PRINTS	Ribosomal protein L7A/RS6 family signature	81	95	IPR018492	-
	Ssu6g3482	129	SUPERFAMILY	L30e-like	7	127	IPR029064	-
	Ssu6g3482	129	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	5	129	-	-
	Ssu6g3482	129	PANTHER	NHP2-LIKE PROTEIN 1	5	129	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g3482	Ssu-Chr6	77707433	77709699	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g3482	36	125	Cytoplasmic Ribosomal Protein Gene Family	AT2G47610	28.889	3.64e-06	42.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g3482	K12845		-	csv:101222939	234.572