Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3477 ATGTCTGGTAGGTGTGCAGCTTGCAAGAATCAAAGAAGAAGATGCCCTTCAGATTGCATTTTCTCTCCATATTTCCCTGCCAATGATCCTCAAAGATTTGCTTGTGTTCACAGAATATATGGTGGCAGCAATGTCGGAAAAATGCTTCAGCAAATTCCACCCTACCTACGTGAACAAGCTGCAAATACTTTGTATTTTGAAGCACAATGTAGGATTCAAGACCCTGTTTATGGATGTGTTGGGATTATCTCTaaattatatcaacaaattCACAATGAAGAAATTGCACTAGCCAAAATCCAAACTCAGATTGCTTGTCACAAGTTTCAAGTCCCACAGGCAAAAGCTGAATCAAACTTCAATGTCTTTTCAACGATTGAAGCTGAATCAAACTTTGATGTCTTGGCAGCACAAAGCAGCAGCACGACACAATTTCAATGGCCAAGTCAAGTTCCTTGGTTTAATTAA 468 0.3868 MSGRCAACKNQRRRCPSDCIFSPYFPANDPQRFACVHRIYGGSNVGKMLQQIPPYLREQAANTLYFEAQCRIQDPVYGCVGIISKLYQQIHNEEIALAKIQTQIACHKFQVPQAKAESNFNVFSTIEAESNFDVLAAQSSSTTQFQWPSQVPWFN 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3477 155 ProSiteProfiles LOB domain profile. 3 104 IPR004883 -
Ssu6g3477 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 117 - -
Ssu6g3477 155 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
Ssu6g3477 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3477 Ssu-Chr6 77629021 77629639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3477 4 115 AS2 family AT3G26660 60.714 3.45e-47 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu6g3477 LOB 4.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3477 - - ccaj:109810657 271.937