Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3470 ATGCCTTCGGTTCAAGATCCATTCTACGTTGTGAAGGAGGAGATTCAAGAATCTATTGATAAATTGCAATCTACTTTTCACCAATGGGAAAACACTGCTGATGCTGGCGAGCGACCACGTCTTTCAAAGGAAGTTCTTACTGGTTGTGAAAGCATTGAATGGCAGGTGGATGAATTGGACAAAGCAATTGCTGTAGCCTCTAGAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGGTTGAAAACCGGAGGAGGTGGACCAGTGATGCTCGCACCCAGGTGAGCACAGCAAAGAAAGCAGTGGGAGCTGGAAAGGGCTCAAATATAACAAACAATGCTAGTCTAAATGGGATGCACAGGGAATTAATGAGGCTTCCTAATTCTCATCAAACTCCATCTGACCAATATGCTGCCCAGAATAATGATGATTTCATAGAATCAGAATCGGATAGGCAGATGCTTCTTATAAAGAGACAGGATGAGGAGTTGGACGAGCTTAGTTTAAGTGTACAAAGAATTGGAGGTGTTGGACTTACGATACATGAAGAGCTCCTTGCACAGGACAAGATTATTGATGAACTGGGTAATGAGATGGACAGTACATCTAATCGCCTGGATTTTGTTCAAAAAAAAGTGGCAATGGTCATGAAGAAGGCTAGCGCAAAGGGCCAGATCATGATGATATTGGGTTTGCTAGCATtgttcatttttctctttatcttggTATTCCTCACCTAG 738 0.4173 MPSVQDPFYVVKEEIQESIDKLQSTFHQWENTADAGERPRLSKEVLTGCESIEWQVDELDKAIAVASRDPSWYGIDEVEVENRRRWTSDARTQVSTAKKAVGAGKGSNITNNASLNGMHRELMRLPNSHQTPSDQYAAQNNDDFIESESDRQMLLIKRQDEELDELSLSVQRIGGVGLTIHEELLAQDKIIDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFLT 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3470 245 SUPERFAMILY t-snare proteins 5 99 IPR010989 GO:0016020|GO:0016192
Ssu6g3470 245 CDD SNARE_Qc 156 213 - -
Ssu6g3470 245 Gene3D - 160 224 - -
Ssu6g3470 245 SMART tSNARE_6 148 215 IPR000727 -
Ssu6g3470 245 Gene3D - 2 103 - -
Ssu6g3470 245 Coils Coil 12 32 - -
Ssu6g3470 245 Coils Coil 191 211 - -
Ssu6g3470 245 PANTHER SYNTAXIN 1 244 IPR045242 -
Ssu6g3470 245 PANTHER SYNTAXIN PROTEIN 1 244 - -
Ssu6g3470 245 SUPERFAMILY SNARE fusion complex 151 215 - -
Ssu6g3470 245 Pfam SNARE domain 190 241 IPR000727 -
Ssu6g3470 245 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Ssu6g3470 245 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 153 215 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3470 Ssu-Chr6 77533150 77536201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3470 55 245 SNARE and Associated Proteins AT1G28490 69.271 1.65e-90 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3470 K08500 - gmx:100793612 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0941 9 39204184 39207668 Ssu6g3470 6 77533150 77536201 PCT