LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g3469	ATGGTTGAAGTGGGTATTCAGATCCCTACCAGCACTTTCGACCCATTTGCTGAGGCTAAAGAATCAGATGCCCCCGGGGCAAAAGAATACGTGCATATCCGCATACAACAGAGGAATGGGAAGAAGAGCCTGACCACAGTGCAAGGGCTGAAGAAAGAGTTCAGCTACGAGAAAATCCTGAAAGACCTCAAGAAAGAGTTTTGTTGCAACGGCAATGTTGTGCATGACAAGGAGCTTGGCAAGATTATCCAACTCCAAGGTGATCAGCGCAAAAATGTTTCTCACTTCCTCATTCAGGCTGGCCTCGTTAGGAAGGACCAGATCAAGATTCATGGTTTCTAA	342	0.4649	MVEVGIQIPTSTFDPFAEAKESDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGNVVHDKELGKIIQLQGDQRKNVSHFLIQAGLVRKDQIKIHGF	113

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g3469	113	ProSiteProfiles	Translation initiation factor SUI1 family profile.	31	101	IPR001950	GO:0003743\|GO:0006413
	Ssu6g3469	113	PIRSF	Transl_init_SUI1_Euk	1	113	IPR005874	GO:0003743
	Ssu6g3469	113	Pfam	Translation initiation factor SUI1	28	101	IPR001950	GO:0003743\|GO:0006413
	Ssu6g3469	113	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1	1	113	-	-
	Ssu6g3469	113	PANTHER	PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG	1	113	-	-
	Ssu6g3469	113	CDD	eIF1_SUI1	29	112	IPR005874	GO:0003743
	Ssu6g3469	113	TIGRFAM	SUI1_MOF2: translation initiation factor SUI1	11	113	IPR005874	GO:0003743
	Ssu6g3469	113	Gene3D	-	3	113	-	-
	Ssu6g3469	113	SUPERFAMILY	eIF1-like	10	113	IPR036877	GO:0003743\|GO:0006413

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g3469	Ssu-Chr6	77529134	77529475	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g3469	1	113	Eukaryotic Initiation Factors Gene Family	AT5G54940	83.186	4.03e-67	196

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g3469	K03113		-	gmx:100499676	218.779

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu6g3469	6	77529134	77529475	Ssu6g3469	6	77529134	77529475	ECH
	Ssu9g0939	9	39184818	39185156	Ssu6g3469	6	77529134	77529475	PCT