Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3468 ATGGAGAAAAAGAATTCAAGTGGAGGTGGAAAGAAAGAATTTGGGAATGGAGAAGATTTGGCTTCGATCATATTGAGCATGAATTCTCTTGAGTTTCTTGCAAAGGAGAAACAAGTGCATGAATATCTTTCATCTCTTTCCATGAACGAAGGCTTGTCCATGGAAATTGGTGAGAAGAGTCTCAAAAGGAAagccaaaaaaagagaaactaaTTATAACCCGTCAAAGAGGGTCAAGAGTGAGGAGGGCAGTAACAGTAGTAATAGTGAAGACCTACGGGAATTGGGTTTAGCAGAAGGGGTTAATCTTCCACAACGTGGTAAATCAAGATTCGACTATTTGTTGGAAGCGGTGTCCATATTTAGTGCTTACGAAGAGCATTGCCTCCAACAAAGCAAACTTGtgagaaacaaaagaaatgtgggTGACGAGCAAGAGCATCCTCATGAACCAGATGAATTGCCAAGGGAGTTTAAAGAAAAGATCCGAGAATTGAATGGATGTGAGGTGAAGTTTGTGATGGAGAAGAAACTTTTCATGACAGACTTGAACCCAAACAATGGCCGCTTCTCTATCCCACCCAGCAAGATTGCCAACAATTTTCTGACACAAACTGAGGAGTCCTCCTTGAATGAGCGTCTCGGGAGAAACAAAAGGCTTGCTGGCATGCCCGTGTTCGTGTTGGATCCTTCTCTGACGGAGCACAACATGTGCTTCAAGAAGTGGGCAATGGAGAGAGGCTGCGTCTACAACTTGACCAAGGGATGGAACCAGATTGTGCTTCACAATGATCTCAAACTCGATGATAAGTTGCAGCTTTGGTCCTTCAGAGTCTCCTCTCAACTCTGTTTTGCACTTGTCAAGCTTTga 870 0.4149 MEKKNSSGGGKKEFGNGEDLASIILSMNSLEFLAKEKQVHEYLSSLSMNEGLSMEIGEKSLKRKAKKRETNYNPSKRVKSEEGSNSSNSEDLRELGLAEGVNLPQRGKSRFDYLLEAVSIFSAYEEHCLQQSKLVRNKRNVGDEQEHPHEPDELPREFKEKIRELNGCEVKFVMEKKLFMTDLNPNNGRFSIPPSKIANNFLTQTEESSLNERLGRNKRLAGMPVFVLDPSLTEHNMCFKKWAMERGCVYNLTKGWNQIVLHNDLKLDDKLQLWSFRVSSQLCFALVKL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3468 289 PANTHER DUF313 DOMAIN PROTEIN 38 288 - -
Ssu6g3468 289 Gene3D - 164 287 IPR015300 -
Ssu6g3468 289 MobiDBLite consensus disorder prediction 61 91 - -
Ssu6g3468 289 SUPERFAMILY DNA-binding pseudobarrel domain 174 287 IPR015300 -
Ssu6g3468 289 MobiDBLite consensus disorder prediction 61 76 - -
Ssu6g3468 289 Pfam B3 domain-containing protein At2g31720-like 160 260 IPR005508 GO:0003677
Ssu6g3468 289 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 38 288 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3468 Ssu-Chr6 77527226 77528095 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3468 158 286 B3 DNA Binding Superfamily AT1G05930 29.231 4.01e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3468 - - gmx:102667627 275.018