Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3466 ATGGAGAAAAAGAATTCAAGTGGAGGTGGAAAGAAAGAATCTGGGAATGGAGGAGATTTGACTGATATCAGGTTGAGGAAGTTTTTCTGTGAGTTTCTTGCATGGGAACAACAACGGAatcctaaattattttcattcctGAAGATGGAAGACAGTGAGATTTTGGAGAGCATCAAAAGAAAACTCAGAAGAGAAGAAGGCACGTCCATGGAAGGTACCAGTAGCGGTGATAATGTTGGTGACGAGCAAGAGCAACCTCATGAATCACATGGATTGCCTAGGGAGGTTAAAGAAAAGATCCAAGAATCTAATGGATGTGAGGTGAAGTTTGTGACGCAGAAAAAACTCTCCAAGACAGACGTAAACCGAAGCAATGGTCGCCTCTCTATCCCACCCAGCAAGATTGTCAACAATTTTCTGACACAAGCTGAGGAGTCCTCCTTGGATAAGCGTTTCGGGGAAAACCAAAGGCTTGCCGGCATGCCCGTGTTTGTGTTGGATCCTTCTCTGACGGAGTACAACATGTGCTTGAAGAAGTGGTCAATGGAGAGAAGCTACGTCTACAACTTGACCAAGGGATGGAACCAGATAGTGCGTGACAATGATCTCAAACCCAATGATACGCTACAGCTCTGGTCCTTCAGAGTCTCTTCTCAGCTCCGTTTTGCACTTGTCAAGCTTTGA 684 0.4401 MEKKNSSGGGKKESGNGGDLTDIRLRKFFCEFLAWEQQRNPKLFSFLKMEDSEILESIKRKLRREEGTSMEGTSSGDNVGDEQEQPHESHGLPREVKEKIQESNGCEVKFVTQKKLSKTDVNRSNGRLSIPPSKIVNNFLTQAEESSLDKRFGENQRLAGMPVFVLDPSLTEYNMCLKKWSMERSYVYNLTKGWNQIVRDNDLKPNDTLQLWSFRVSSQLRFALVKL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3466 227 PANTHER DUF313 DOMAIN PROTEIN 57 226 - -
Ssu6g3466 227 Gene3D - 102 224 IPR015300 -
Ssu6g3466 227 MobiDBLite consensus disorder prediction 1 20 - -
Ssu6g3466 227 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 57 226 IPR005508 GO:0003677
Ssu6g3466 227 MobiDBLite consensus disorder prediction 81 95 - -
Ssu6g3466 227 SUPERFAMILY DNA-binding pseudobarrel domain 112 223 IPR015300 -
Ssu6g3466 227 MobiDBLite consensus disorder prediction 63 95 - -
Ssu6g3466 227 SMART B3_2 112 226 IPR003340 GO:0003677
Ssu6g3466 227 CDD B3_DNA 113 222 IPR003340 GO:0003677
Ssu6g3466 227 ProSiteProfiles B3 DNA-binding domain profile. 178 227 IPR003340 GO:0003677
Ssu6g3466 227 Pfam B3 domain-containing protein At2g31720-like 98 199 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3466 Ssu-Chr6 77518485 77519168 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3466 96 224 B3 DNA Binding Superfamily AT1G05930 27.692 1.21e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu6g3466 DUF313 3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3466 - - gmx:102667627 211.46