Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3465 ATGGGCGGTTGTCTGAGTAAAAAAGGGTCAGAGCCAGAAGAGCACATTGGTTACAGACATGTTGCTGGGGGTGGTGCTGGTGTGCACAATCTCAAGAGCCATGAACCCTTTGTGAACCAATCGAAACCCCCTTCTCATCAACCTTACCAATTGCCTGAGAAACATGCACCTCAGGCCCCTTGGAGGTCCACTGTTCAAGCCCAAAGAAGCCCAAAACCTGCTCACAGGTCAGACACAATCACTGGGAAGCCCTTTGAGGATGTTAGGCAGCTCTACACACTTGGGAAAGAATTGGGGAGAGGCCAATTTGGGGTGACTTATCTCTGCACAGAGAATTCAACTGGCTTGAAATATGCCTGCAAGTCCATTTCAAAGAGGAAGCTTGTGAGCAGAGCTGACAAGGAGGACATGAAGAGGGAGATCCAAATTATGCAGCATTTGATTGGACAGTCCAACATTGTGGAGTTTAAAGGTGCTTATGAGGACAAGCAGTCAGTTCATGTGGTTATGGAGCTGTGTGCAGGTGGTGAGCTTTTTGACAGGATTATTGCCAAGGGGCACTACAGTGAAAGGGCTGCTGCTTCAATATGTAGACAGATTGTTAAGGTTGTTCACATCTGCCATTTTATGGGTGTGATGCATAGGGATCTCAAGCCAGAGAATTTCTTGCTGGCCAGTAAGGATGACAAGGCACTTCTCAAGGCCACAGATTTTGGCTTGTCAGTCTTCATTGAAGAAGGAAAGGTGTATCGAGATTTAGTTGGCAGTGCTTACTATGTTGCTCCAGAAGTTCTACATCGTGGCTATGGGAAGGAAGTAGATGTATGGAGTGCAGGAGTTATATTGTATATCCTACTTAGCGGTGTACCTCCATTTTGGGCAGAGACGGAAAAGGGAATATTTGATGCCATATTGCAAGGTCATATTGACTTTGAAAGTCATCCATGGCCAAGCATATCAAATAGTGCCAAGGACCTTGTTCGCAAGATGCTTATAAAGGATCCAAAGAAACGCATTACTTCTGCTCAGGTTCTAGAGCACCCGTGGCTTAAAGAAGGTGGAAATGCTTCTGACAAGCCAATAGACAGTGCAGTGCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAGCTAAAAAAACTAGCCCTCAAGGTCATTGCTGAAAATCTTTCTGAAGAAGAGATCCAAGGTTTGAAGGCAATGTTCACAAATATGGACACTGACAATAGTGGTACAATCACCTATGAGGAACTGAGGGCAGGGTTGCAAAGACTTGGCTCAAAGCTTACTGAAGCTGAAGTGCGGCAGCTTATGGACGCCGCTGATGTAGATGGAGATGGCACAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACATAGGTTAGAAAGAGATGAGCATCTTTTCAAGGCCTTccaatattttgataaagacGGCAGTGGGTATATCACCAGAGATGAACTGGAAACAGCCATGAAGGAGTACGGTATGGGTGACGAGGCCACAATCAGGGAAATTATATCTGAAGTTGATACAGATAATGATGGTAGAATCAACTATGAAGAATTTTGTACAATGATGAGGAGTGGAACTCAACAAGAAGGCAAGCTATTCTAA 1623 0.4412 MGGCLSKKGSEPEEHIGYRHVAGGGAGVHNLKSHEPFVNQSKPPSHQPYQLPEKHAPQAPWRSTVQAQRSPKPAHRSDTITGKPFEDVRQLYTLGKELGRGQFGVTYLCTENSTGLKYACKSISKRKLVSRADKEDMKREIQIMQHLIGQSNIVEFKGAYEDKQSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVKVVHICHFMGVMHRDLKPENFLLASKDDKALLKATDFGLSVFIEEGKVYRDLVGSAYYVAPEVLHRGYGKEVDVWSAGVILYILLSGVPPFWAETEKGIFDAILQGHIDFESHPWPSISNSAKDLVRKMLIKDPKKRITSAQVLEHPWLKEGGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNMDTDNSGTITYEELRAGLQRLGSKLTEAEVRQLMDAADVDGDGTIDYIEFITATMHRHRLERDEHLFKAFQYFDKDGSGYITRDELETAMKEYGMGDEATIREIISEVDTDNDGRINYEEFCTMMRSGTQQEGKLF 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3465 540 ProSitePatterns EF-hand calcium-binding domain. 513 525 IPR018247 -
Ssu6g3465 540 Coils Coil 415 435 - -
Ssu6g3465 540 MobiDBLite consensus disorder prediction 61 75 - -
Ssu6g3465 540 ProSitePatterns EF-hand calcium-binding domain. 442 454 IPR018247 -
Ssu6g3465 540 ProSiteProfiles EF-hand calcium-binding domain profile. 501 535 IPR002048 GO:0005509
Ssu6g3465 540 Gene3D - 360 535 - -
Ssu6g3465 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Ssu6g3465 540 Pfam Protein kinase domain 92 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3465 540 ProSitePatterns EF-hand calcium-binding domain. 478 490 IPR018247 -
Ssu6g3465 540 PANTHER SERINE/THREONINE-PROTEIN KINASE 44 535 - -
Ssu6g3465 540 Gene3D Phosphorylase Kinase; domain 1 94 177 - -
Ssu6g3465 540 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Ssu6g3465 540 Gene3D Transferase(Phosphotransferase) domain 1 178 359 - -
Ssu6g3465 540 SMART serkin_6 92 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3465 540 ProSiteProfiles Protein kinase domain profile. 92 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3465 540 SUPERFAMILY Protein kinase-like (PK-like) 77 371 IPR011009 -
Ssu6g3465 540 CDD EFh_PI-PLC 398 531 - -
Ssu6g3465 540 SUPERFAMILY EF-hand 389 529 IPR011992 -
Ssu6g3465 540 ProSiteProfiles EF-hand calcium-binding domain profile. 465 500 IPR002048 GO:0005509
Ssu6g3465 540 Pfam EF-hand domain pair 468 530 IPR002048 GO:0005509
Ssu6g3465 540 Pfam EF-hand domain pair 398 458 IPR002048 GO:0005509
Ssu6g3465 540 CDD STKc_CAMK 92 349 - -
Ssu6g3465 540 MobiDBLite consensus disorder prediction 1 81 - -
Ssu6g3465 540 ProSitePatterns EF-hand calcium-binding domain. 406 418 IPR018247 -
Ssu6g3465 540 ProSiteProfiles EF-hand calcium-binding domain profile. 393 428 IPR002048 GO:0005509
Ssu6g3465 540 CDD EFh 469 530 IPR002048 GO:0005509
Ssu6g3465 540 ProSiteProfiles EF-hand calcium-binding domain profile. 429 464 IPR002048 GO:0005509
Ssu6g3465 540 SMART efh_1 433 461 IPR002048 GO:0005509
Ssu6g3465 540 SMART efh_1 469 497 IPR002048 GO:0005509
Ssu6g3465 540 SMART efh_1 504 532 IPR002048 GO:0005509
Ssu6g3465 540 SMART efh_1 397 425 IPR002048 GO:0005509
Ssu6g3465 540 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-LIKE 44 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3465 Ssu-Chr6 77473808 77478335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3465 29 540 EF-hand Containing Proteins AT3G20410 75.954 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu6g3465 Pkinase 6.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3465 K13412 - gmx:100794852 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3465 6 77473808 77478335 Ssu9g0938 9 39174339 39178834 ECH
Ssu6g3465 6 77473808 77478335 Ssu6g3465 6 77473808 77478335 ECH