Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3464 ATGCCTATTACCAACAAATCTCCAACTCCAACTATGACCAACTGGTTTTCTGAAATGGTAGAAGCAGTAACAAGTTGTAGGCAACTTTTTTCTTGGCTTGCTGGCGTTGGCGCTTCTGTAGTTGGGCTATTCATGAAAGCCATGGAGAGAGTTCTTTTTGCTGCATTCACTTGCATTCTGGCACTAGGAGGGTCAATAGTAGGAACAATTGCAGGAGGTATCAAAGGGCAGACCACAGAAGCTGGTTTTCTTGATGGGGCTGGCAAAGGAGCAATTACAGGTGCCATTGCAGCCTTGGAATTGATCAATTTTACTGCTGTTGATGAGCCATTGTCCAAGGTTGCCCTGTTGAGAAGTTTATTTAATGGGAAAGTCTTCATGGAATGGATATGTCCAGCTGTTGCACAACTCTATCAGTTGCATGTAACTATTAACATACTGGAAACCATTTACGAAGAAGTTTCAGATATTTATGATACCAGGGGAGTCAGGGGGATACCCCAGAATGTAATTATGAAGCTTCCTTTTCAGCCATTCAACTCTAGCAAAATGTTGAAATTATACAACATGTCTTGCTGCTCAATTTGCTTCCAGGATTTTGAGGATGGAGAATTGGTCAGGATACTTCCAAAATGTGGCCATCTTTTTCATTTAGAATGCATAGACAAGTGGCTTGTCAATCAAGGATCATGCCCAATGTGCAGAACTTGTGTTCCTGACCACATTCGTAAATAA 735 0.4163 MPITNKSPTPTMTNWFSEMVEAVTSCRQLFSWLAGVGASVVGLFMKAMERVLFAAFTCILALGGSIVGTIAGGIKGQTTEAGFLDGAGKGAITGAIAALELINFTAVDEPLSKVALLRSLFNGKVFMEWICPAVAQLYQLHVTINILETIYEEVSDIYDTRGVRGIPQNVIMKLPFQPFNSSKMLKLYNMSCCSICFQDFEDGELVRILPKCGHLFHLECIDKWLVNQGSCPMCRTCVPDHIRK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3464 244 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 238 - -
Ssu6g3464 244 CDD RING-H2_PA-TM-RING 192 235 - -
Ssu6g3464 244 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 238 IPR044523 -
Ssu6g3464 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 241 IPR013083 -
Ssu6g3464 244 ProSiteProfiles Zinc finger RING-type profile. 193 235 IPR001841 -
Ssu6g3464 244 Pfam Ring finger domain 193 235 IPR001841 -
Ssu6g3464 244 SUPERFAMILY RING/U-box 192 240 - -
Ssu6g3464 244 SMART ring_2 193 234 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3464 Ssu-Chr6 77452837 77455077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3464 52 235 C3H Transcription Factor Family AT5G66070 36.082 3.16e-36 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3464 - K19041 gmx:100305612 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3464 6 77452837 77455077 Ssu6g3464 6 77452837 77455077 ECH