Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3457 ATGGACGCATTTCAAAACGGCGATAGGGCGACGTATATTGAAGAGCAGATTTCAATTATCAGAGAGATTAATAGCAAGAAAAGCTACTACGAGATATTGGGATTGGAGAGAGGTTGCAGTGCAAAGGATGTGAGAGAATCTTACCGGAAACTGAGTCTGAAGGTTCATCCCGACAAGAACAGAGCCCCTGGCGCGGAGGAAGCGTTCAAGGCGGTGTCAAAGGCGTTTCAGTGTCTCAGTGACGAAGAGAGTCGGTACATATACGACCTCTCGGGAGAGGATGAATCGATTTATTCTCAAGAAATGCTTTATAGGCGCGCTGAACATGGTTCCGATGGCTCTGGTGACTCGATACATTTTCTTTGCCGAGTGATTATAGTGGCTCATTGGTGCCTTATCATGTTTGATTTTGGAAAACTTCTTAAAAAGGAGTTTAATATTTGA 444 0.4414 MDAFQNGDRATYIEEQISIIREINSKKSYYEILGLERGCSAKDVRESYRKLSLKVHPDKNRAPGAEEAFKAVSKAFQCLSDEESRYIYDLSGEDESIYSQEMLYRRAEHGSDGSGDSIHFLCRVIIVAHWCLIMFDFGKLLKKEFNI 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3457 147 PANTHER AT29763P-RELATED 9 113 - -
Ssu6g3457 147 Gene3D DnaJ domain 24 124 IPR036869 -
Ssu6g3457 147 PANTHER AT29763P-RELATED 9 113 - -
Ssu6g3457 147 CDD DnaJ 29 81 IPR001623 -
Ssu6g3457 147 Pfam DnaJ domain 29 89 IPR001623 -
Ssu6g3457 147 ProSiteProfiles dnaJ domain profile. 28 92 IPR001623 -
Ssu6g3457 147 PRINTS DnaJ domain signature 48 63 IPR001623 -
Ssu6g3457 147 PRINTS DnaJ domain signature 64 84 IPR001623 -
Ssu6g3457 147 PRINTS DnaJ domain signature 30 48 IPR001623 -
Ssu6g3457 147 ProSitePatterns Nt-dnaJ domain signature. 69 88 IPR018253 -
Ssu6g3457 147 SUPERFAMILY Chaperone J-domain 24 95 IPR036869 -
Ssu6g3457 147 SMART dnaj_3 27 84 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3457 Ssu-Chr6 77318698 77319141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3457 26 89 C2H2 Transcription Factor Family AT1G74250 40.000 7.87e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3457 K09518 - ming:122071461 149.058