Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3450 ATGAGTGGAGTGGGGATTGATATTGGAAATGAGAACTGTGTGATTGCTGCAGTGAAGCAACGTGGGATTGATGTTTTGTTGAATGATGAATCCAAACGTGAAACCCCTGCTGTGGTGTGCTTTGGAGAGAAGCAAAGGTTTTTAGGGTCAGCTGGTGCTGCTTCTGCTATGATGCACCCCAAGTCCACAATATCTCAAGTGAAGAGACTAATAGGGAGGAGATTTGCAGACCCTGATGTTCAAAACGAGTTAAGAATGCTCCCCGTTGAAACTTCGGAAGGCCCGGATGGTGGCATTCTGATTCACTTGAAACACTTGAAGGAGACTCATGTGTTTACCCCTGTTCAAATAGTAGCAATGCTCTTTGCTCACTTGAAGACTATAGCTGGAAAACATTTTGGGACTGCTGTTTCTGACTGTGTCATTGGGGTTCCGTCGTACTTTACCAACTTGCAGAGACAAGCTTACCTCGACGCAGCAACAATTGTTGGGTTGAAGCCTTTGAGGTTGATCCATGATTGCACTGCAACTGCTCTTGGTTATGGAGTTTACAAAACAGATTTTCCCAGTGCAGCTCCTATTAATGTTGCATTTGTTGACATAGGTCATTGTGATACTCAGGTCTCTATTGCAGCGTTTCAGGCTGGTCAAGTGAAGATACTTTCACATTCTTATGACAGGAGCTTAGGGGGGAGAGACTTTGATGAGGTTCTGTTTAGTCATTTTGCAGCAAAATTTAAGGAACAGTACAGTATTGACGTGTGTTCTAATGCCAGGGCATGTAGGAGGCTACGTGCGGCATGTGAGAAGTTGAAGAAGGTTTTGAGTGCGAATTCAGAGGCTGCTCTGAGCATTGAGTGTTTGATGGATGAAAAAGATGTTAAGGGCTTTATCAAAAGGGAAGAATTTGAGAATCTGGCATCAGGATTATTGGAGAGAATTTATACTCCTTGCGACAAAGCATTGACTGATGCAGGCTTGACTGTAGAAAAGATCAATTCTGTTGAGTTAGTTGGTTCAGGTTCAAGGATTCCAGCTATCACTAGAATATTAACTTGTCTATTTAAGAGAGAACTCAGCCGCACGCTGAATGCAAGTGAGTGTGTAGCTCGTGGGTGTGCTCTCCAGTGTGCAATGCTCAGTCCTGTTTTCCGTGTCAAAGAATATGAGGTCCAGGATTCTATTCCTTTTTCCATTGGACTTTCATCTGATGGAGGTCCAATTTGTGCAGGATCGCATGGTGTACTCTTCCCAGAAGGCCAACCCATTCCGAGTGTTAAAGTTCTAACATTTCAGTGCAGTAATTTGCTTCGTCTGGAAGCATTCTATGCTAATCCAGATAAATTACCACCTGGGACATCTCCCAAAATTAGTTGCTTCACAATTGGTCCTTTCCATGGATCCCGTGGAAGTAAGGCGAGAATTGAAGTTCAAGTTCAACTAAATTTGCATGGCGTTATCAGTATTGAATCAGCTACAtTGGTTGAGGATCATGTAGATGATTCAGTTACAACAGGTGTTTATCATTCAAATTCTGAAGCAATGAACGTTGAACCTGTTTCTGAGACAATTGAAAATGTCACTGAAGATAGTATCAATAAAAAGTGTGAATCTCCACATCTTTCTGCTGATGGtacaagaaaagataaagcTAACAGAAGGCTTCATGTACCAGTGAGTGAGAACATCTATGGTGGAATAACCAAGGCTGAGATCTTGGAAGCTCAAGAAAAAGAGCTCCAGTTAGCCGATCAGGACAGAACAATGGAGCAAACCAAAGACATGAAGAATTCGTTGGAGTCTTATATTTATGAAACAAGGAGTAAGCTCTTCAACACATATCAGACGTTTGCAAGTAAACATGAGACGGATGGCATATCTAGGAGCCTGGAAGAGACTGAGGAATGGCTTTatgatggtggtgatgatgaAACTGTACATGCTTATTCCTCAAAACTGGAAGAACTAAAACAGCTGGTGGATCCAATTGAATATCGGTATAAAGACACAGAAGAAAGACCACAAGCTACAAGAGATTTGTTAAGTTGCATTGTAGAGTATCGAATGTCTGCAGATTGTCTTCCACCCCAAGAAAAAGAACTGaTCATCAATGAGTGCAATAAAGCAGAGCAGTGGCTAAGAGAGATGAAGCAACAACAAGATCTTTATCCTAAGAACTTTGATCCGGTATTATTGTCAAGTGATATCAAGAGCAAGGCAGAGGATTTAAACTTAGTATGCCAACAGATATTGAAATCCAAGGGTTCTCCAATTCCAAAAGACAACGGTGAAGACAGGCAGAATACTTCTAATCATCAATGA 2322 0.4113 MSGVGIDIGNENCVIAAVKQRGIDVLLNDESKRETPAVVCFGEKQRFLGSAGAASAMMHPKSTISQVKRLIGRRFADPDVQNELRMLPVETSEGPDGGILIHLKHLKETHVFTPVQIVAMLFAHLKTIAGKHFGTAVSDCVIGVPSYFTNLQRQAYLDAATIVGLKPLRLIHDCTATALGYGVYKTDFPSAAPINVAFVDIGHCDTQVSIAAFQAGQVKILSHSYDRSLGGRDFDEVLFSHFAAKFKEQYSIDVCSNARACRRLRAACEKLKKVLSANSEAALSIECLMDEKDVKGFIKREEFENLASGLLERIYTPCDKALTDAGLTVEKINSVELVGSGSRIPAITRILTCLFKRELSRTLNASECVARGCALQCAMLSPVFRVKEYEVQDSIPFSIGLSSDGGPICAGSHGVLFPEGQPIPSVKVLTFQCSNLLRLEAFYANPDKLPPGTSPKISCFTIGPFHGSRGSKARIEVQVQLNLHGVISIESATLVEDHVDDSVTTGVYHSNSEAMNVEPVSETIENVTEDSINKKCESPHLSADGTRKDKANRRLHVPVSENIYGGITKAEILEAQEKELQLADQDRTMEQTKDMKNSLESYIYETRSKLFNTYQTFASKHETDGISRSLEETEEWLYDGGDDETVHAYSSKLEELKQLVDPIEYRYKDTEERPQATRDLLSCIVEYRMSADCLPPQEKELIINECNKAEQWLREMKQQQDLYPKNFDPVLLSSDIKSKAEDLNLVCQQILKSKGSPIPKDNGEDRQNTSNHQ 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3450 773 MobiDBLite consensus disorder prediction 758 773 - -
Ssu6g3450 773 CDD HSPA4_like_NDB 2 381 - -
Ssu6g3450 773 Gene3D - 567 680 IPR029048 -
Ssu6g3450 773 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 600 IPR029047 -
Ssu6g3450 773 Gene3D - 5 374 - -
Ssu6g3450 773 PANTHER HEAT SHOCK 70 KDA PROTEIN 1 773 - -
Ssu6g3450 773 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 569 666 IPR029048 -
Ssu6g3450 773 Gene3D Actin; Chain A, domain 4 230 313 - -
Ssu6g3450 773 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Ssu6g3450 773 SUPERFAMILY Actin-like ATPase domain 3 185 IPR043129 -
Ssu6g3450 773 MobiDBLite consensus disorder prediction 753 773 - -
Ssu6g3450 773 Coils Coil 575 595 - -
Ssu6g3450 773 Gene3D - 186 360 - -
Ssu6g3450 773 Pfam Hsp70 protein 4 667 IPR013126 GO:0005524|GO:0140662
Ssu6g3450 773 Gene3D - 38 113 - -
Ssu6g3450 773 PANTHER HSC70CB, ISOFORM G-RELATED 1 773 - -
Ssu6g3450 773 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 535 IPR029047 -
Ssu6g3450 773 PRINTS 70kDa heat shock protein signature 363 383 - -
Ssu6g3450 773 PRINTS 70kDa heat shock protein signature 472 488 - -
Ssu6g3450 773 PRINTS 70kDa heat shock protein signature 2 15 - -
Ssu6g3450 773 PRINTS 70kDa heat shock protein signature 388 407 - -
Ssu6g3450 773 PRINTS 70kDa heat shock protein signature 30 42 - -
Ssu6g3450 773 PRINTS 70kDa heat shock protein signature 140 160 - -
Ssu6g3450 773 PRINTS 70kDa heat shock protein signature 332 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3450 Ssu-Chr6 77252791 77265372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3450 4 431 Calmodulin-binding Proteins AT1G16030 34.107 7.92e-81 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3450 K09489 - gmx:100795914 1340.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3450 6 77252791 77265372 Ssu6g3450 6 77252791 77265372 ECH