Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu6g3448 | ATGAGGAGACCGAAATCGAAGGAATTTCGGAAGCAACAGCGAGTCTCGGAGGAGGAAGAGATAAGCCTGTTGAACTCATGGATCCAGTTTCAGCCACCGGACTCGGGTTCCAACCCAATGTCGCTCCCTCCTCTCCCCAAAAATGCCCCCGTTGGCCGCCTTGACGACAACGCCTACTCGCGCTACTCCGGCGCGTGCAGGTTCGACCAATTCCCACTCTCCAAGAAAACCAAGGACGCCCTGCGAGGAGCCAAGTTCGTCGCCATGACCGACATTCAGAGAGCGTCTCTCCCCCACACGCTCTGTGGTCGTGACATCCTCGGCGCCGCCAAAACTGGCTCCGGTAAAACCCTCGCGTTCATTATCCCCGTGTTGGAGAAGTTGTATAGAGAGAGATGGGGACCTGAGGATGGGGTTGGCAGCATCATCATATCGCCTACGAGAGAATTGGCTGGTCAGTTATTTGATGTGTTGAAGGTTGTTGGCAAATACCATAATTTTAGTGCTGGCCTTCTCATTGGTGGTCGAAAGGATGTGGACATGGAGAAAGAACGTGTTAACGAGCTCAACATATTGATCTGCACGCCCGGTAGACTGCTACAACACATGGATGAAACTCCAAATTTTGATTGTTCACAGATGCAGGTTTTGGTACTAGATGAGGCTGATCGGATTCTAGACAGTGGGTTCAAGAAGGAACTAAATGCAATCATTTCCCAACTACCGAAGCGTAGACAAACCTTGCTTTTCTCTGCAACTCAAACAAAGTCAATTCAAGATCTTGCAAGACTAAGTTTGAAGGATCCAGAGTATCTGAGTGTGCACGAAGAATCTGTGACTGCCACTCCTACTCTGTTGAAGCAAATTGTGATGGTTGTTGATCTGGATCAAAAGCTAGATATGCTGTGGAGTTTCATAAAGACACACCTACAGTCGAAAATACTTGTCTTCCTTTCAAGCTGTAAACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCCTGGCATACCGTTAAAGTGCCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTCTCAACTGATGTGGCCGCAAGAGGCCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCTGAAAATGTAGCTTCTTACATACATAGAGTTGGTCGCACTGCTCGATATAAATCTGGTGGAAAGTCAGTTTTATTTTTGCTGCCTTCAGAAATTCAAATGCTAGAAAAGTTAAAAGCAGCAAAGGTTCCTGTGCATTTTAATAAGCCGAGGCAAGAACTACTGCAACCAGTTTCTAGTTTGTTGGCATCTTTACTGGTCAAATACCCAGATATGCAGCATCGGGCTCAGAGGGCGTTCATCACATATTTGAGATCCATCCATATCCAAAAGGATAAAGACATATTTGATGTTATGAAGCTACCTATTGACAAGTATTCAGCATCATTAGGTTTACCAATGACCCCCAAAATCCGTTTTCTAAATcagaaaattaaatctaaagctgtgtcaacaaaatcaattttagttgaaCCGGAAGATTCAAACAAGGAAAATGTCTTGGAGGTTTCAAGAAAGAAGCTAGACACAGTTGCTTTCAAGGATGAGGAAACCGAAAATGATCTTCTTCAGTTAGCTGATACTGCAAATGAAGGCGAAGTGAAGTCATCTGAAATTGGAGAAATAATACCAGCAACCCGTgtattgaagaaaaagaagctCAAGATTAATGTACATAGGCCGGTTGGGACTAGGGTTGTATTTGACGATGAAGGCAACACACTTCCTCCACTAGCTAGGATAGCTGACGCACACAGTGGCAAAGAAACGTTGCTGCTTGACCCAGAACAAAAAGCTGAATACTATAGAAGGATGCGAGATGATTTGAAGAAGGCTGACAAGGAAGACAAGCTTCTAGAGCGTCAGCGGcgtagagaaaaaagaatcaaGCAGAGGATGAAATGGAAGGCCGGGAATGTGGAAGAAGAGGACGACCAAGATGATATTTCTGGGTCGGAAGGAGACGAAACTGTTGATAGACGGCATAAAAAGAGTAAAGTATACTTTGATAGTGACAGTGACGAGGGTGAAAGAAATGAAGTCACACGGAATACTGGTAAAGGTAATGGCGCCGTTACTTTGGAGGAGCAAGAAGCTCTCGCTTTGAAATTGTTGAATTCCATGCACTCATAG | 2244 | 0.4323 | MRRPKSKEFRKQQRVSEEEEISLLNSWIQFQPPDSGSNPMSLPPLPKNAPVGRLDDNAYSRYSGACRFDQFPLSKKTKDALRGAKFVAMTDIQRASLPHTLCGRDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQLFDVLKVVGKYHNFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMVVDLDQKLDMLWSFIKTHLQSKILVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLEKLKAAKVPVHFNKPRQELLQPVSSLLASLLVKYPDMQHRAQRAFITYLRSIHIQKDKDIFDVMKLPIDKYSASLGLPMTPKIRFLNQKIKSKAVSTKSILVEPEDSNKENVLEVSRKKLDTVAFKDEETENDLLQLADTANEGEVKSSEIGEIIPATRVLKKKKLKINVHRPVGTRVVFDDEGNTLPPLARIADAHSGKETLLLDPEQKAEYYRRMRDDLKKADKEDKLLERQRRREKRIKQRMKWKAGNVEEEDDQDDISGSEGDETVDRRHKKSKVYFDSDSDEGERNEVTRNTGKGNGAVTLEEQEALALKLLNSMHS | 747 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu6g3448 | 747 | PANTHER | RNA HELICASE | 57 | 529 | - | - | |
| Ssu6g3448 | 747 | SMART | helicmild6 | 325 | 408 | IPR001650 | - | |
| Ssu6g3448 | 747 | CDD | DEADc_DDX10 | 77 | 275 | - | - | |
| Ssu6g3448 | 747 | SMART | ultradead3 | 85 | 289 | IPR014001 | - | |
| Ssu6g3448 | 747 | Pfam | DEAD/DEAH box helicase | 90 | 260 | IPR011545 | GO:0003676|GO:0005524 | |
| Ssu6g3448 | 747 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 97 | 272 | IPR014001 | - | |
| Ssu6g3448 | 747 | PANTHER | ATP-DEPENDENT RNA HELICASE DDX10-RELATED | 57 | 529 | - | - | |
| Ssu6g3448 | 747 | Pfam | Helicase conserved C-terminal domain | 298 | 407 | IPR001650 | - | |
| Ssu6g3448 | 747 | Pfam | Domain of unknown function (DUF4217) | 451 | 508 | IPR025313 | - | |
| Ssu6g3448 | 747 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 294 | 452 | IPR001650 | - | |
| Ssu6g3448 | 747 | Gene3D | - | 283 | 528 | IPR027417 | - | |
| Ssu6g3448 | 747 | MobiDBLite | consensus disorder prediction | 665 | 730 | - | - | |
| Ssu6g3448 | 747 | MobiDBLite | consensus disorder prediction | 690 | 719 | - | - | |
| Ssu6g3448 | 747 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 218 | 226 | IPR000629 | - | |
| Ssu6g3448 | 747 | CDD | SF2_C_DEAD | 286 | 417 | - | - | |
| Ssu6g3448 | 747 | Coils | Coil | 639 | 659 | - | - | |
| Ssu6g3448 | 747 | SMART | DUF4217_3 | 447 | 510 | IPR025313 | - | |
| Ssu6g3448 | 747 | Gene3D | - | 53 | 278 | IPR027417 | - | |
| Ssu6g3448 | 747 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 138 | 427 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu6g3448 | Ssu-Chr6 | 77216245 | 77221051 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu6g3448 | 93 | 429 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 29.825 | 1.50e-36 | 140 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu6g3448 | K14776 | - | gmx:100792106 | 1330.85 |