Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3434 ATGAGTTTCTTTTCATGTTGCTCGTCACAAGAGAAGATCAACAAGAGCTCATTGAAAAGGAGCAGTAAGGACTACCATCACGCAAAGGCTCTGCCATCATTTGCCAACATGTGTTTTAAAACTGATAGCAGCAAGCGGAAGTACATAGAAGAAGAAATAGCAAAGATTGGAAAAGGGAATATTACCTCTCAGATTTTTTCTTATCACGAGCTATGTGTTGCAACTCGGAACTTTCACCCTGACAATATGATTGGTGAAGGAGGCTTTGGGAGGGTATACAAAGGACGCATTAAAAGCCTAAATCAGGTTGTTGCTGTGAAGCAACTTAACCGGAATGGATTCCAAGGAAACAGAGAATTTCTTGTAGAGGTTTTGATTTTGAGTCTCTTGCACCACCCCAACCTTGTCAATTTGGTAGGGTATTGTGCAGATGGTGATCAAAGGATTTTGGTATACGAGTACATGGTGAATGGTTCTTTAGAAGATCACCTCCTTGAATTACCTCCGGACAGAAAGCCTTTAGACTGGCGTACTAGAATGAACATCGCAGCGGGTGCAGCTAAAGGACTTGAATATTTACATGAAGTAGCAAATCCTCCAGTGATATACCGTGATTTCAAAGCATCAAACATACTATTAGATGAAAACTTCAATCCAAAGCTCTCTGATTTTGGACTTGCAAAGCTTGGTCCAACGGGTGATAAAACTCATGTATCCACCAGGGTGATGGGAACTTACGGCTACTGTGCACCCGAGTATGCCTCAACAGGTCAATTGACTACAAAATCAGATATATACAGCTTTGGAGTAGTGTTTTTAGAGATGATCACAGGAAGAAGAGTAATTGATCAGTCAAGACCATCTGAAGAGCAAAACTTAGTCACTTGGGCACAACCACTATTCAAAGACAGAAGAAAATTTACATTCATGGCTGATCCATTGCTAAAAGGGAACTACCCAACAAAGGGTCTACACCAAGCACTAGCAGTTGCTGCAATGTGCCTTCAGGAGGAAGCTGATATCCGACCTTTGATTAGTGACGCGGTTACAGCTCTTGACGTTTTAGCCAAGAAGCATGTGCAAGTGGGTAAACAACAACGTAAAGAGACTTTTTTTGAGGACGGGGAATGCAGTTGA 1137 0.4178 MSFFSCCSSQEKINKSSLKRSSKDYHHAKALPSFANMCFKTDSSKRKYIEEEIAKIGKGNITSQIFSYHELCVATRNFHPDNMIGEGGFGRVYKGRIKSLNQVVAVKQLNRNGFQGNREFLVEVLILSLLHHPNLVNLVGYCADGDQRILVYEYMVNGSLEDHLLELPPDRKPLDWRTRMNIAAGAAKGLEYLHEVANPPVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLTTKSDIYSFGVVFLEMITGRRVIDQSRPSEEQNLVTWAQPLFKDRRKFTFMADPLLKGNYPTKGLHQALAVAAMCLQEEADIRPLISDAVTALDVLAKKHVQVGKQQRKETFFEDGECS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3434 378 ProSiteProfiles Protein kinase domain profile. 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3434 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Ssu6g3434 378 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Ssu6g3434 378 Gene3D Transferase(Phosphotransferase) domain 1 155 375 - -
Ssu6g3434 378 SUPERFAMILY Protein kinase-like (PK-like) 64 356 IPR011009 -
Ssu6g3434 378 Gene3D Phosphorylase Kinase; domain 1 49 154 - -
Ssu6g3434 378 Pfam Protein kinase domain 79 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3434 378 CDD STKc_IRAK 84 353 - -
Ssu6g3434 378 PANTHER OS07G0668900 PROTEIN 1 378 - -
Ssu6g3434 378 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3434 Ssu-Chr6 76986600 76989380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3434 60 374 Glycoside Hydrolase AT3G07070 68.111 7.16e-163 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Ssu6g3434 Pkinase 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3434 - - gmx:100798032 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3434 6 76986600 76989380 Ssu6g3434 6 76986600 76989380 ECH
Ssu9g0894 9 38310130 38321288 Ssu6g3434 6 76986600 76989380 PCT