Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3427 ATGATTTGCACGGTGAAACAACCCGTCATATCGATCAGAGGTTCTGATGCTTTTCTACGGAAAAAGGGTTCAGCTTCAACCCCAGTTCAGCCATGTTCCCTCGTTCCTCCTTCTTCCTTTCCAAGGGAAAACACTCTGAGATCTCTGGTGTCAGTGCAGACGCCACTGCACCTTTCGTGTGTTGGTTTTGGGAACTTTGTTGGATCGGTGAGGCGCGAGCATGGTGATTTGATGACATGTGGGGCGTACGAGGCTGAGAGATCAGAGGTTGAAGGGGCTGGGGCTCCATCAGAGGCTGCTAAGAAGGTGAAAATTGGGATATACTTTGCAACCTGGTGGGCTCTCAATGTGGtgttcaatatttataataagaagGTGCTGAATGCATACCCTTACCCCTGGCTTACCTCAACTCTTTCCCTTGCATGTGGGTCTCTCATGATGTTGATCTCTTGGGCCACCAGGATAGCTGAGCCTCCCAAGACTGATCTTGAGTTCTGGAAGACTTTGTTCCCTGTTGCTGTTGCACATACAATAGGACATGTAGCCGCGACCGTTAGCATGTCAAAAGTTGCAGTATCATTCACCCATATTATTAAGAGTGGCGAGCCTGCTTTTAGTGTTCTGGTTTCCAGATTTCTTCTGGGTGAGACCTTCCCAGTGCCAGTCTATCTGTCTTTACTTCCTATCATCGGTGGATGTGCACTTGCTGCTGTGACTGAGCTCAATTTCAATATGACtgGTTTTATGGGGGCTATGATATCGAATTTGGCATTCGTATTCCGtaatatcttttcaaaaaaggGCATGAAGGGAAAGGCTGTTAGTGGAATGAATTACTACGCTTGTTTATCTATGTTGTCCCTCGTAATTCTCACACCATTTGCGATTGCTGTGGAGGGACCACAGATGTGGGCAGCTGGATGGCAAACAGCACTCTCTCAAATTGGACCCCAATTTATATGGTGGGTGGCAGCTCAGAGCATATTTTATCATCTGTACAATCAGGTGTCATACATGTCTCTGGATGAGATCTCTCCCTTGACATTTAGCATTGGAAACACCATGAAACGTATATCTGTTATAGTTTCTTCAATTATTATCTTCCACACACCAGTTCAGCCTATTAATGCTCTAGGAGCTGCTATTGCCATTCTCGGAACCTTCTTGTATTCACAGGCAAAGCAGTAG 1191 0.4484 MICTVKQPVISIRGSDAFLRKKGSASTPVQPCSLVPPSSFPRENTLRSLVSVQTPLHLSCVGFGNFVGSVRREHGDLMTCGAYEAERSEVEGAGAPSEAAKKVKIGIYFATWWALNVVFNIYNKKVLNAYPYPWLTSTLSLACGSLMMLISWATRIAEPPKTDLEFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPVPVYLSLLPIIGGCALAAVTELNFNMTGFMGAMISNLAFVFRNIFSKKGMKGKAVSGMNYYACLSMLSLVILTPFAIAVEGPQMWAAGWQTALSQIGPQFIWWVAAQSIFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSSIIIFHTPVQPINALGAAIAILGTFLYSQAKQ 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3427 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 146 239 - -
Ssu6g3427 396 Pfam Triose-phosphate Transporter family 104 392 IPR004853 -
Ssu6g3427 396 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 104 395 IPR004696 GO:0016021|GO:0022857|GO:0055085
Ssu6g3427 396 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC 34 395 - -
Ssu6g3427 396 PANTHER SOLUTE CARRIER FAMILY 35 34 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3427 Ssu-Chr6 76910154 76915128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3427 1 395 Antiporters AT5G54800 74.876 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3427 K15283 - gmx:100776233 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3427 6 76910154 76915128 Ssu9g0879 9 38021834 38025269 ECH
Ssu6g3427 6 76910154 76915128 Ssu6g3427 6 76910154 76915128 ECH
Ssu9g0879 9 38021834 38025269 Ssu6g3427 6 76910154 76915128 PCT