Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3423 ATGGGGAAAAATGAGTTTCTCACACCTAAAGCAATTGCCAATAGAATCAAAGCAAAAGGATTGCAGAAGCTTCGGTGGTATTGCCAGATGTGCCAGAAGCAATGCCGAGACGAGAATGGCTTCAAATGCCATTGCATGAGTGAAGGGCACCAGCGTCAAATGCAAATTTTTGGACAAAACCCACACCGGATAGTTGAGGGCTATTCTGAAGAGTTTGAGAGCTCTTTTCTGGAGCACATGAAGCGCAGCCACCGATTCAGCCGTGTGGCAGCCACTGTAGTCTATAACGAATACATAAACGATAGACACCACATTCATATGAACTCCACTCAGTGGGCTACTCTTACTGAGTTTGTTAAGTACTTGGGTAGAATTGGCAAGTGTAAGGTTGAAGAAACTCCCAAGGGATGGTTCATTACATACATAGATAGAGATTCAGAAACCCTTTTCAAGGAGAGGATGAAGAATAAGAGAATCAAGGCAGATATGGCAGATGAAGAAAAGCAAGAGAAGGAGATCAGGAAACAGATTGAAAAGGCTGAGCAAATGATGCAGCTGCCTTCTCCTGAGGCTGATCAGCCTTCACAGGTTGAGCCTCCGAGGGAACTGAATATGGACGATGAAATTAAGATAGGATTTTCTCTTGGGTCATCATCGGCTAGACCTGTGATCAAGGAAAAACGGGAGGCATCAAGGGTGGTCTTTGACGAGGTTGATGAAGAGAAACATGGGGAAAGAAATCCTGGAAACAATTTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAACTTTGGATGAAATGATGAGggatgaagagaagaaaaaggaaaaaattaaccGGAAGGATTATTGGTTGCATGAGGGAATTGTTGTTAAGGTTATGAGCAAAGTCTTGGCAGAGAAGGGGTACTACAAGCAAAAGGGTGTTGTGCGGAAGGTGATTGACAGGTATGTTGGGGAAATTGAAATGCTTGAAAGCAAGCATGTGCTCAGAGTTGATCAGGCAGAGCTTGAAACTGTGATTCCACAAGTTGGGGGTCGTGTAAAAATAGTCAATGGTGCATATCGAGGATCAATTGCTAAGCTGTTGGGGGTGGATACAGATAATTTTTGTGCTAAGGTGCAGATTGAGAAAGGACCCTACGATGGCAGAGTACTTAAGGCTATGGAATATGAGGACATTTCTAAAGTAGCCTAG 1197 0.4261 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPHRIVEGYSEEFESSFLEHMKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKYLGRIGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIKADMADEEKQEKEIRKQIEKAEQMMQLPSPEADQPSQVEPPRELNMDDEIKIGFSLGSSSARPVIKEKREASRVVFDEVDEEKHGERNPGNNLKRKESGGGKSTLDEMMRDEEKKKEKINRKDYWLHEGIVVKVMSKVLAEKGYYKQKGVVRKVIDRYVGEIEMLESKHVLRVDQAELETVIPQVGGRVKIVNGAYRGSIAKLLGVDTDNFCAKVQIEKGPYDGRVLKAMEYEDISKVA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3423 398 SMART Kin17_mid_2 52 178 IPR019447 -
Ssu6g3423 398 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Ssu6g3423 398 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Ssu6g3423 398 Coils Coil 154 186 - -
Ssu6g3423 398 Pfam KN17 SH3-like C-terminal domain 280 333 IPR041330 -
Ssu6g3423 398 Gene3D - 288 341 - -
Ssu6g3423 398 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 398 IPR037321 -
Ssu6g3423 398 CDD KOW_KIN17 344 397 IPR041995 -
Ssu6g3423 398 Gene3D - 60 160 IPR038254 -
Ssu6g3423 398 MobiDBLite consensus disorder prediction 235 273 - -
Ssu6g3423 398 Gene3D - 342 398 IPR014722 -
Ssu6g3423 398 Coils Coil 261 281 - -
Ssu6g3423 398 PANTHER BNAA05G13760D PROTEIN 1 398 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3423 1 398 C2H2 Transcription Factor Family AT1G55460 67.943 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3423 K13102 - gmx:100785931 739.954