LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g3420	ATGGAGCCCAACATGGGTTATTCCAGGATGCTCTTATTACTCCTCCTTGGTTCCACTTCATTGATTTTCCTCTCACACCTGGCTTCTGCAGCCACTCCCAAGCTCAACACTCAAGAGGTGAAGGCACTGAAGGAGATAGGGAGCAAGATTGGGAAGAAGGACTGGGACTTTGGGGTGGATCCTTGCAGTGGAAAAGGGAATTGGAATGTGTCTGATGCTAGAAAAGGCTTTGAGAGTTCTGTGATTTGCGATTGTTCCTTCAATCACAATTCTTCTTGCCATGTTGTAAGCATATCCTTGAAGGCTCAGAATCTGACTGGTGGTCTCTCACCAGAGTTTTCCAAGCTTCATTATCTCAAACTATTGGACCTTAGTCGTAACATCATCACTGGTTCTATACCTCCACAATGGTCTACCATGCGCCTGGTTGAGCTctCTTTTATGGGAAACAGATTATCAGGGCCATTCCCCAAAGTTCTCACCAATATAACAACCCTCAGAAACTTGAGTATTGAAGGAAATCAATTTTCTGGCCTCATTCCAACGGAGATTGAGAAGTTGACCAATTTACAAAAACTCATTCTGTCATCCAATGCATTCAGAGGAGAATTGCCACCCGCACTTTCCAAGTTGACCAACTTGACTGATTTGAGGATAAGCGACAATAATTTCTTTGGGAAGATTCCTGATTTCATTAGTAATTGGACGCTGATTGAAAAGTTGCATATGCACGGTTGCTCTCTTGAGGGGCCCATTCCTTCTAGCATTTCCGCCCTGACAAGATTAAGTGATTTGAGGATAACTGACCTAAAAGGTCGTAAAAGCTCTACTTTCCCACcactaaataatatgaaatccATGAAGACACTGGTATTGAGAAAATGCATGATTAAGGGAGAGATCCCGGAATATATTGGGAGAATGGAAAAACTGAAAATCTTAGATTTGAGTTACAATGGCTTGAGTGGAGAGATACCTGAATCTTTTGCGGAACTTGACAAAGTAGACTTCATGTATCTTACTGGGAACAAGTTATCAGGGATTATACCTGGCTGGGTCCTtggaaataacaaaaatatTGATGTCTCTGCCAATAACTTCTCCTGGGATAGCTCAAGTCCAACTGAATGTCAACGAGGGAGCATAAACCTTGTTGAGAGCTACTCTTCATCTGTAAATACACAGAATAAGGTTCATTCATGCTTAAAAAGGAACTTTCCATGCCCTGCTTCAGTTAGCCAATATCAGTACTCCCTGAACATTAATTGTGGTGGTAAGGAAGCAAATATTAGTGGTCATATTTATGAAGCTGACGGAGAACAAAAAGGCGCTGCGATGTTATATTACATTAGCCAGGATTGGGCTCTAAGTAGCAGTGGAAACTTCATGGACAATGATATTGACTCTGATCCCTATATTGTGACCAATACTTCTAGACTTAATGTCTCTAGACTCAATTCACAACTATACACAACAGCTCGTGTTTCTCCCCTTGCTCTCACATACTATGGCCTCTGCCTAATAAATGGAAATTACACTGTTAATCTTCACTTTGCAGAgattattttcatcaatgataGGTCACTTAACAGTCTTGGGAGGCGGGTTTTTGACGTCTATATCCAGGGGAATTTGATGCTGAAAGACTTTGATATCCAAAGAGAAGCTGGTGGTACTGGCAAGCCAATTGTGAAGACATTTAATGCTACTGTCACCCAACATACTTTGAAGATTCACTTTTACTGGGCTGGAAAAGGAACCACTGGCATACCCACAAGAGGAGTTTATGGACCTCTAGTATCTGCTATTTCAGTAAACCCTAATTTTGAACCCCCATCACCATCAGGGGATGGAAACAGAAGTTATGTCATACTGGCAGTTAGCATAGTCGCTGGTGTTGTAGTTGTTCTTCTTCTGGTGCTGGGTCTCATGAGGAGAATGGGATGGTTAGGAGGCAAAGATCCAGTGTATAAAGaGCTTAGGGGTATAGATCTGCAGACCGGATTATTTGCACTAAGACAAATCAAAGCAGCAACCAAAAACTTTGATGCAGCAAATAAAATTGGCGAAGGTGGCTTTGGTTGTGTTTACAAGGGCCTACTATCAGATGGTACAGTAATAGCAGTAAAGCAGCTCTCTTCAAAATCTAAACAAGGAAACCGTGAGTTTGTGAATGAGATGGGAATGATATCTGGACTTCATCATCCCAATCTTGTTAAGCTTTATGGATGTTGTGTGGAGGGGAACCAACTAATACTGATATATGAGTATATGGAAAATAATTGTCTATCTCGCGTTCTTTTTGGGAAGGACACAGACAGTAGAACAAAACTGGACTGGCCAACCAGGAAGAAAATTTGTCTTGGTATAGCTAAAGCTTTGGCTTATCTTCATGAAGAGTCCAgaataaaaatcatacataGGGATATAAAAGCAAGTAATGTATTGCTCGACAAGGATTTTAATGCTAAAGTTTCAGATTTTGGCTTGGCAAAacttattgaagatgacaaaaCCCATATTAGCACTCGAGTTGCAGGAACAATTGGTTATATGGCTCCGGAATATGCAATGCGAGGCTATCTAACTGACAAAGCAGATGTTTATAGCTTTGGGGTGGTTGCACTGGAAACTGTCAGCGGAAAGAGCAATACAAATTACAGGCCGAGCGAGGATTTTGTTTACCTTCTTGATTGGGCCTATGTTTTGCAAGAGAGAGGAAGTCTTTTGGAGCTGGTTGATCCAGATTTGGGTTCAGAATATTCAACTGAGGAGGCCATGGTAGTGCTAAATGTGGCTCTCTTATGTACTAATGCATCTCCTACACTTAGACCAACTATGTCCCAAGTTGTGAGCATGCTTGAAGGTTGGACTGATATTCAGGACCTACTTTCTGATCCGGGATATTCAGCTGCTAGTGCCAGCTCCAAATATAAGAGTATAAGAAATCACTTCTGGCAAAATCCAAGCGGAACACATACCATGTCAACAGCTAGTATACATACTGATTCCTCTGGTTCACATGCTGAAACAGAAAAGAGCTATCGTCTGGTAACCGTTAATTCAGATGGATCAGACAAGTGA	3084	0.4063	MEPNMGYSRMLLLLLLGSTSLIFLSHLASAATPKLNTQEVKALKEIGSKIGKKDWDFGVDPCSGKGNWNVSDARKGFESSVICDCSFNHNSSCHVVSISLKAQNLTGGLSPEFSKLHYLKLLDLSRNIITGSIPPQWSTMRLVELSFMGNRLSGPFPKVLTNITTLRNLSIEGNQFSGLIPTEIEKLTNLQKLILSSNAFRGELPPALSKLTNLTDLRISDNNFFGKIPDFISNWTLIEKLHMHGCSLEGPIPSSISALTRLSDLRITDLKGRKSSTFPPLNNMKSMKTLVLRKCMIKGEIPEYIGRMEKLKILDLSYNGLSGEIPESFAELDKVDFMYLTGNKLSGIIPGWVLGNNKNIDVSANNFSWDSSSPTECQRGSINLVESYSSSVNTQNKVHSCLKRNFPCPASVSQYQYSLNINCGGKEANISGHIYEADGEQKGAAMLYYISQDWALSSSGNFMDNDIDSDPYIVTNTSRLNVSRLNSQLYTTARVSPLALTYYGLCLINGNYTVNLHFAEIIFINDRSLNSLGRRVFDVYIQGNLMLKDFDIQREAGGTGKPIVKTFNATVTQHTLKIHFYWAGKGTTGIPTRGVYGPLVSAISVNPNFEPPSPSGDGNRSYVILAVSIVAGVVVVLLLVLGLMRRMGWLGGKDPVYKELRGIDLQTGLFALRQIKAATKNFDAANKIGEGGFGCVYKGLLSDGTVIAVKQLSSKSKQGNREFVNEMGMISGLHHPNLVKLYGCCVEGNQLILIYEYMENNCLSRVLFGKDTDSRTKLDWPTRKKICLGIAKALAYLHEESRIKIIHRDIKASNVLLDKDFNAKVSDFGLAKLIEDDKTHISTRVAGTIGYMAPEYAMRGYLTDKADVYSFGVVALETVSGKSNTNYRPSEDFVYLLDWAYVLQERGSLLELVDPDLGSEYSTEEAMVVLNVALLCTNASPTLRPTMSQVVSMLEGWTDIQDLLSDPGYSAASASSKYKSIRNHFWQNPSGTHTMSTASIHTDSSGSHAETEKSYRLVTVNSDGSDK	1027

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g3420	1027	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	72	995	-	-
	Ssu6g3420	1027	Gene3D	-	414	608	-	-
	Ssu6g3420	1027	SUPERFAMILY	L domain-like	78	371	-	-
	Ssu6g3420	1027	MobiDBLite	consensus disorder prediction	992	1027	-	-
	Ssu6g3420	1027	Pfam	Protein tyrosine and serine/threonine kinase	685	954	IPR001245	GO:0004672\|GO:0006468
	Ssu6g3420	1027	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	805	817	IPR008271	GO:0004672\|GO:0006468
	Ssu6g3420	1027	ProSiteProfiles	Protein kinase domain profile.	682	958	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu6g3420	1027	Pfam	Malectin domain	418	603	IPR021720	-
	Ssu6g3420	1027	Gene3D	Phosphorylase Kinase; domain 1	656	757	-	-
	Ssu6g3420	1027	Gene3D	Transferase(Phosphotransferase) domain 1	758	966	-	-
	Ssu6g3420	1027	ProSitePatterns	Protein kinases ATP-binding region signature.	688	710	IPR017441	GO:0005524
	Ssu6g3420	1027	Gene3D	Ribonuclease Inhibitor	42	202	IPR032675	-
	Ssu6g3420	1027	PANTHER	LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE-RELATED	72	995	-	-
	Ssu6g3420	1027	SUPERFAMILY	Protein kinase-like (PK-like)	666	978	IPR011009	-
	Ssu6g3420	1027	SMART	serkin_6	682	958	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu6g3420	1027	CDD	STKc_IRAK	688	956	-	-
	Ssu6g3420	1027	Pfam	Leucine rich repeat	287	345	IPR001611	GO:0005515
	Ssu6g3420	1027	Gene3D	Ribonuclease Inhibitor	203	270	IPR032675	-
	Ssu6g3420	1027	Gene3D	Ribonuclease Inhibitor	271	381	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g3420	Ssu-Chr6	76711449	76723613	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g3420	217	1018	Receptor kinase-like Gene Family	AT1G07650	65.148	0.0	1024

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Ssu6g3420		PK_Tyr_Ser-Thr	1.5e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g3420	-		-	gmx:100784864	1813.12