Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3411 ATGTTTGGTGGATTGAGGAATAACTTTTCTGGTTCATTAACATCGCATGAGATGACATCCGGCAATTTCCTATCCCAGCAGCAGCAACGCACGTTCATACAGATGAGGACGGTTCTGAAGGTGGTTGATAATGCGGGGGCAAAAAAAGTGATGTGCATTCAAGCTTTGAAAGGGAAGAAGGGGGCAAGGTTAGGTGACACAATAATAGCGTCAGTGAAGGAGGCCCATCCCAATGGGAAAGTAAAGAAAGGAAAGGTTGTGTATGGTGTGGTTGTGCGTGCGGCCATGCAAAGGGGAAGACGTGATGGAAGTGAGGTCAAGTTTGATGACAATGCTGTGGTGCTTGTGGACTAG 354 0.4718 MFGGLRNNFSGSLTSHEMTSGNFLSQQQQRTFIQMRTVLKVVDNAGAKKVMCIQALKGKKGARLGDTIIASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRRDGSEVKFDDNAVVLVD 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3411 117 Gene3D Ribosomal protein L14 32 117 IPR036853 GO:0003735|GO:0005840|GO:0006412
Ssu6g3411 117 SUPERFAMILY Ribosomal protein L14 33 117 IPR036853 GO:0003735|GO:0005840|GO:0006412
Ssu6g3411 117 SMART Ribosomal_L14_2 32 117 IPR000218 GO:0003735|GO:0005840|GO:0006412
Ssu6g3411 117 ProSitePatterns Ribosomal protein L14 signature. 89 115 IPR019972 -
Ssu6g3411 117 Pfam Ribosomal protein L14p/L23e 33 117 IPR000218 GO:0003735|GO:0005840|GO:0006412
Ssu6g3411 117 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 13 117 IPR000218 GO:0003735|GO:0005840|GO:0006412
Ssu6g3411 117 PANTHER 50S RIBOSOMAL PROTEIN HLP, MITOCHONDRIAL-LIKE ISOFORM X1 13 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3411 Ssu-Chr6 76643400 76643968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3411 19 117 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 33.019 1.75e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3411 K02874 - vvi:100241180 178.333