Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3410 ATGGAGTTTCCGAACGAAGCAATATCAGAAGGGTGTTCTCAGAAGAAAACGGGAAGAGGGAAAATAGAAATCAAGCGGATCGAGAACACAACGAATAGGCAAGTTACCTTCTGCAAGCGCCGCAACGGGTTGCTCAAGAAGGCTTATGAATTGTCTGTTTTGTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCCAACAACAGTGTTAGAGGAACTATCGATAGGTACAAGAAAGCATGTGCTGCTTCCTCAAATGCAGAATCTGTCTCTGAAGCTAATACACAGTTTTATCAGCAGGAATCGtccaaattaaaaagacaaatcaGAGACATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTAAAGGAGTTAAAGAACCTTGAGAGCAGATTGGAGAAAGGTTTAAGCAGAGTGCGATCCAGAAAGCATGAAACATTGTTTGCCGATATCGAGTTCATGCAAAAGCGGGAAATAGAGCTGCAAAACCATAATAATTTTCTGCGAGCTAAGATAGCTGAAAACGAGAGGGCACAACAACGGCAACCGAATTTGATGCCGGGAACAGTGTGCGAGACCATACCTTCACAATCATATGACCGGAATTTCTTCCCTGTAAATCTCATAGATTCCGATCATCAATATTCACGTCAAGAACAGACTGCTCTTCAACTTGTCTGA 726 0.4242 MEFPNEAISEGCSQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIDRYKKACAASSNAESVSEANTQFYQQESSKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREIELQNHNNFLRAKIAENERAQQRQPNLMPGTVCETIPSQSYDRNFFPVNLIDSDHQYSRQEQTALQLV 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3410 241 Gene3D - 29 97 IPR036879 GO:0003677|GO:0046983
Ssu6g3410 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Ssu6g3410 241 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Ssu6g3410 241 Coils Coil 106 126 - -
Ssu6g3410 241 CDD MADS_MEF2_like 18 94 IPR033896 GO:0000977|GO:0045944
Ssu6g3410 241 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Ssu6g3410 241 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Ssu6g3410 241 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Ssu6g3410 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 229 - -
Ssu6g3410 241 SUPERFAMILY SRF-like 18 93 IPR036879 GO:0003677|GO:0046983
Ssu6g3410 241 Pfam K-box region 101 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu6g3410 241 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 13 229 - -
Ssu6g3410 241 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Ssu6g3410 241 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Ssu6g3410 241 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu6g3410 241 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3410 Ssu-Chr6 76616915 76623728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3410 13 241 MADS-box Gene Family AT3G58780 69.620 1.29e-115 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ssu6g3410 K-box 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3410 K09264 - gmx:100792224 422.165