Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3406 ATGGGGTTTCCACTGATAGGGGAGACCATGGAATTCTTCAATGCTCAAAGGAGAAACCAATTGTTTGAAGAGTTTGTTCATCCTCGCATTCTGAAACATGGGAAGATCTTCAGAACAAGGATCATGGGGTCTCCAACTGTGGTTGTGAATGGAGCTGAGGCCAACAAATTCTTACTGTCCAATGAGTTCAAGTTGGTGAAAAGCTCTTGGCCTTCTTCCTCAGTTCAGCTCATGGGAAGGGACTCTATCATGGAGAAAGATGGGGAAAGGCACCGTTTCCTCCGTGGTGTTATTGGCACAAGCCTTGGTTATGCTGGACTTGAGCTACTAGTTCCAAAACTGTGCAATTCTGTTCAGTTCCATTTAGCTACAAAGTGGAAGGGCCAAGAAAAGATTAGTCTTTACCGTTCAACAAAAGTCCTCAGTTTTAACATAGTGTTTGAGTGTTTGTTGGGGATCAAAGCGGAGCCAGGTATGCTTGATACCTTTGAAAGAGTGTTGGAAGGGGTGTTTTCTCCAGCAGTTATGTTTCCAGGTTCTAAATTTTGGAGAGCAAAGAAGGCCAGGGTGGAGATAGAAAAGATGTTGGTCAAAGTggtgagagagaaaagaaaggaaatggaAGGAAGCTTGCAAAGAGAGCAAGATGGAATGCTGCTGTCCAAATTGGTATATGGGATGATGCAAGGGGAGATCAGTGAAAAAGAGGTCATAGACAATGTGGTGCTGCTAGTTTTTGCAGCTCATGATACTACTTCTTTTGCTGTTGCTATGACATTCAAGATGTTGGCTCAGCATCCTGATTGCTATGGAAAACTTCTTCAAGAACATGTTGCTATAATGAGCAACAAAAGCTGGGGTGAGAATCTCACAATGGAGGACATAAAGAGGATGAAATATACCTGGCAAGTTGCTAGAGAAAGCATGAGATTGTTTCCTCCTATCTTTGGTTCTTTCAGGAAGGCTATTGCTGATATTGAATATGAAGGATTCATTATACCAAGAGGATGGAAGGTGCTATGGACAACATACGGCACACATTACAATGAAGAGTATTTTAAGGATCCTATGAGTTTCAACCCAAGTAGGTTTGAGGAGGGAATCCCCCAATATGCATTTGTTCCCTTTGGAGGAGGGCCAAGAGTGTGTGCAGGGTACCAATTAGCTAAGTTAAATATCCTCATCTTTGTGCACTATGTTGTGACCCAATATGACTGGTTCTTACTCCATCCAGATGAGCCAGTCGCAATGGATCCCCTGCCTTTCCCTTCCCTTGGAATGCCCATCAGAATTTCCCCCAAGTATACATGA 1311 0.4233 MGFPLIGETMEFFNAQRRNQLFEEFVHPRILKHGKIFRTRIMGSPTVVVNGAEANKFLLSNEFKLVKSSWPSSSVQLMGRDSIMEKDGERHRFLRGVIGTSLGYAGLELLVPKLCNSVQFHLATKWKGQEKISLYRSTKVLSFNIVFECLLGIKAEPGMLDTFERVLEGVFSPAVMFPGSKFWRAKKARVEIEKMLVKVVREKRKEMEGSLQREQDGMLLSKLVYGMMQGEISEKEVIDNVVLLVFAAHDTTSFAVAMTFKMLAQHPDCYGKLLQEHVAIMSNKSWGENLTMEDIKRMKYTWQVARESMRLFPPIFGSFRKAIADIEYEGFIIPRGWKVLWTTYGTHYNEEYFKDPMSFNPSRFEEGIPQYAFVPFGGGPRVCAGYQLAKLNILIFVHYVVTQYDWFLLHPDEPVAMDPLPFPSLGMPIRISPKYT 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3406 436 PANTHER TAXADIENE 5-ALPHA HYDROXYLASE 1 433 - -
Ssu6g3406 436 Gene3D Cytochrome P450 1 433 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g3406 436 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 376 385 IPR017972 GO:0005506|GO:0016705
Ssu6g3406 436 PANTHER CYTOCHROME P450 26 1 433 - -
Ssu6g3406 436 SUPERFAMILY Cytochrome P450 2 433 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g3406 436 PRINTS E-class P450 group I signature 383 406 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g3406 436 PRINTS E-class P450 group I signature 30 49 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g3406 436 PRINTS E-class P450 group I signature 342 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g3406 436 PRINTS E-class P450 group I signature 373 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g3406 436 PRINTS P450 superfamily signature 303 314 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g3406 436 PRINTS P450 superfamily signature 374 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g3406 436 PRINTS P450 superfamily signature 247 264 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g3406 436 PRINTS P450 superfamily signature 383 394 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g3406 436 Pfam Cytochrome P450 15 425 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3406 Ssu-Chr6 76573845 76575543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3406 1 339 Cytochrome P450 AT2G42850 66.372 1.59e-159 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3406 - - gmx:100793336 854.744