Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3401 ATGCAGCAAGATCACAAGAAAAAGAGTTCAATGGAGATGGAATTTTTCTCCAATTATGGTGATGCCAACAGGTATAAAATTCAAGAGGTCATTGGGAAAGGAAGCTATGGTGTTGTTTGTTCAGCTATTGACACTCATACCGGCGAAAAAGTGGCAATTAAAAAGATTCATGATATCTTTGAGCATGTATCTGATGCTGCACGTATTCTCCGTGAGATAAAGTTGCTTAGACTTCTTCGACATCCTGATATTGTTGAAATTAAGCACGTTATGCTGCCTCCTTCTAGGAGGGactttaaagatatttatgttgtttttgagctCATGGAGTCTGATCTGCATCAAGTCATTAAAGCCAATGATGACTTAACAAAAAAGCACTATCAATTTTTTCTATACCAGTTACTTCGAGCATTGAAGTATATTCACACTGCAAATGTCTATCATCGAGACTTGAAGCCAAAGAATATACTGGCCAACGCAAACTGTAAActtaaaatatgtgattttgggTTAGCTAGAGTTGCTTTTAGTGACACACCAACAACTGTATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCACCAGAGCTCTGTGGATCCTTTTACTCAAGGTATACTCCAGCAATTGATGTTTGGAGTATAGGTTGCATCTTTGCTGAAGTATTAATAGGAAAGCCTCTTTTCCCCGGAAAAAATGTTGTCCATCAATTGGATCTGATGACAGATCTGCTTGGCACTCCCTCACTGGATACTATATCCCAgGTACGCAATGATAAGGCAAGGAGATACCTGACTAGTATGAGAAAAAAGCAGCCTATACCATTTGCACAAAAATTTCCTAATGCCGATCCTTTAGCACTACGACTACTGGAAAGGTTGCTCGCCTTTGATCCAAAAGACCGGCCTACTGCTGAAGAGGCATTAGCTGATCCTTACTTCAAGGGACTTGCAAAAGTTGAGAGGGAACCATCCTGCCAGCCTATTACAAAAATGGAGTTTGAATTCGAAAGGAGAAGAGTCACAAAGGAAGAAATTGGAGAGTTAATTTTCCGTGAGATTCTAGAGTACCATCCTCAACTATTGAAAGACTATATAAATGGAACAGAGAGAACTAATTTTCTTTACCCaagTGCTGTCGATCAATTCAAAAAGCAGTTTGCTCATCTTGAGGAAACTGGTGGTAAAAGTTGTCCAGTTATGCCACTTGAAAGAAAGCATGTATCACTTCCCAGATCAACGGTTGTACACTCAAATATGGTACCCTCAAAAGAGCAATCAAATATTGCTTCCTGCAAAAATCGGCAAACAGCTGAGGAACATAACAATATTTCCAGAGACACAGAAAATCCTGCGCCAAGATCCAGTCAGAGTCTCCAAAAATTTCCGCTAGGTATGTGA 1407 0.3852 MQQDHKKKSSMEMEFFSNYGDANRYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKIHDIFEHVSDAARILREIKLLRLLRHPDIVEIKHVMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKKHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSRYTPAIDVWSIGCIFAEVLIGKPLFPGKNVVHQLDLMTDLLGTPSLDTISQVRNDKARRYLTSMRKKQPIPFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEEIGELIFREILEYHPQLLKDYINGTERTNFLYPSAVDQFKKQFAHLEETGGKSCPVMPLERKHVSLPRSTVVHSNMVPSKEQSNIASCKNRQTAEEHNNISRDTENPAPRSSQSLQKFPLGM 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3401 468 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3401 468 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3401 468 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 458 - -
Ssu6g3401 468 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Ssu6g3401 468 MobiDBLite consensus disorder prediction 450 468 - -
Ssu6g3401 468 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Ssu6g3401 468 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3401 468 MobiDBLite consensus disorder prediction 421 440 - -
Ssu6g3401 468 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Ssu6g3401 468 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 458 - -
Ssu6g3401 468 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Ssu6g3401 468 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Ssu6g3401 468 CDD STKc_TDY_MAPK 24 361 - -
Ssu6g3401 468 MobiDBLite consensus disorder prediction 421 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3401 Ssu-Chr6 76523443 76528452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3401 1 446 MAP Kinase Gene Family AT2G42880 85.650 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Ssu6g3401 Pkinase 5.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3401 - - aprc:113848523 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0845 9 37065781 37068093 Ssu6g3401 6 76523443 76528452 PCT