Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3400 ATGGGCCAAAGATGCTCAGGCCCAACAGTGTCTCAGTTTCCCGCCACATATATGTTCATCTTCCCGCCATCTAACCCTCCCTCACACACACATCCACCCCAATCACTTGGCTCTCGATTCCTTCGTTTCCCATTTCGCAAACACAATTCTCCGATCCACTTCATCATTTCGGTCGCAAAGCAAATGATCCCACAACAAGAACCCGATTTCAATcccaatcatctcaaactatatTACGGAAAGCTGTTTCCTTTTGCTGATTTAGTCAAATGGGTGTCTTACGGCAACGATGGGAAGCACCCTGGTTGTGATCAATCCTACTTTGGGCGAAGAGAGTTTTCCTTCACTCTGGAGAATGATATATATCTGCGCTTCCAATCTTTCAACAATGCCCTTGAGCTCGAAAACTCCATTAAAGAAAAGTCCCCTGTTAAGATAGATATTGGACCTGTCTACACTGTTGATCCTGCAAAAAGGAATGCCTACGCACAGAGTGCCAATAATGTCTTTACCCCAGTTGAGAGGGAGTTGATTTTTGATATAGATATGACAGATTATGATGATGTTAGATACTGCTGTTCAGGTGCTGACGTTTGTTTGGTTTGCTGGCCGTTGATGACTATAGCTATCAAAGTGATTGATACTGCCTTAAGAGATGACTTTGGTTTCAAACACATTCTCTGGGTCTATAGTGGCCGCAGAGGTGTTCATTGTTGGGTCTGTGATGGGAAGGCAAGAAGGTTGACTAATGAGCAAAGAGCTGCTATTGCTGACTATTTTCGTGTCTACAAGGGCAATGAAAATAGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCGACATCATACACTAAAGTTCTCAAGGactattttgagaaaaatttgcTTACAGGTCAAAATATACTTGCTACTGAGGAGAGATATGAGAAGATCCTTAACATGATTCCGGATGAATCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGGTCTTCTAGTGCAAAAGAAGACATCAATGTTGTTCGATGGGAACAGTGCAAACAATTGCTGCAATCTGGAAAGCATAAGGCACAAGTGCGTCGCTGTGTTGAAGAGATTGTGTTCTTCTTTACTTATCCCAGGCTAGATATGGAGGTTTCTAAACATATGAATCATTTGCTTAAAGCACCATTCTGTGTACATCCTAAAACAGGCCGTGTTTGTGTCCCTATTGACCCAAATCGGTGCGAGGAGTTTGATCCTACTACAGTACCCACCCTTTCACAGGTAAACTTATCCTGCAATGACAATCTTCTGACTTGCATTCCAGGGAGAGGAAAGCTTTCCATTGGCTCAGTCATTTGCTTAGTTTTCAATAGGGATGTTTCTATTTATTACTTGGGAGTATCAGGAACTTGCATAAAGACACTTGCTCCCGTCTCCAACACATTTTCATATGTGGACAAGGAAAACATCACCTTTTGA 1488 0.416 MGQRCSGPTVSQFPATYMFIFPPSNPPSHTHPPQSLGSRFLRFPFRKHNSPIHFIISVAKQMIPQQEPDFNPNHLKLYYGKLFPFADLVKWVSYGNDGKHPGCDQSYFGRREFSFTLENDIYLRFQSFNNALELENSIKEKSPVKIDIGPVYTVDPAKRNAYAQSANNVFTPVERELIFDIDMTDYDDVRYCCSGADVCLVCWPLMTIAIKVIDTALRDDFGFKHILWVYSGRRGVHCWVCDGKARRLTNEQRAAIADYFRVYKGNENSHKKVSLMGAALHPFLATSYTKVLKDYFEKNLLTGQNILATEERYEKILNMIPDESIASELRGRWQDSRRSSSAKEDINVVRWEQCKQLLQSGKHKAQVRRCVEEIVFFFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNRCEEFDPTTVPTLSQVNLSCNDNLLTCIPGRGKLSIGSVICLVFNRDVSIYYLGVSGTCIKTLAPVSNTFSYVDKENITF 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3400 495 PANTHER DNA PRIMASE SMALL SUBUNIT 81 432 IPR014052 GO:0003896|GO:0006269
Ssu6g3400 495 CDD AE_Prim_S 84 422 IPR014052 GO:0003896|GO:0006269
Ssu6g3400 495 Gene3D DNA primase, PRIM domain 60 466 - -
Ssu6g3400 495 Pfam DNA primase small subunit 179 413 IPR002755 GO:0003896|GO:0006269
Ssu6g3400 495 PANTHER DNA PRIMASE 81 432 - -
Ssu6g3400 495 TIGRFAM primase_sml: putative DNA primase, eukaryotic-type, small subunit 76 427 IPR014052 GO:0003896|GO:0006269
Ssu6g3400 495 SUPERFAMILY Prim-pol domain 71 431 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3400 64 431 Core DNA Replication Machinery Family AT5G41880 70.461 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3400 K02684 - gmx:100780574 733.021