Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3399 ATGGACAAACATTCTGGGAATTCTATGCCAGCTCATGGTGCTACAGGTCCATCTGAGATTTTCTCGCTTAATGTTGCCAAAAAAGTGGGAAGCAGTGCATGGGGAATACCAGGTGGGACTGATGTATTTCATGCTTCAAGTGATGCTAGCCTGTTTTGTAGTTCACTTCCTGTTCTTCCACATCAAAAGCTAAACATTACTGATTCAGAACATTATGGTCAATCTGTCAATGATAACTGGCCAGTATTAGGCAAAGTTCTCAAAGAGGTTGAGGGACAAGATCCACTTGGACATATTGAAATCAGTGCAGTTGGAAACATGCTTcctgatgatgaagatgagcTATTAGCTGGGATAACGGATGATTTTGAGCTGAGTGGGTTGCCCAGCCAACTGGAGGATCTGGATGAAAATGATCTTTTTGGCAGTGGAGGGGGGTTTGAAATGGATTTTGAACCCCAAGAGAGCCTTAGTATTGGTATATCAAAGATAAGCTTATCTGATGAAGTTCATTCAAATGGTATTGGTCATTATGCAATCCCAAATGGCATGGGAACAGTGGTTGGGGAGCATCCTTATGGAGAGCATCCATCAAGGACATTATTTGTGCGGAACATCAACAGTAATGTTGAGGACTCTGAATTAAGATCACTATTTGAGCAATATGGCGATATCAGAACACTGTACACTTCATGCAAGCATAGGGGCTTTGTGATGATATCTTATTATGACATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAGAACAAGCCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCAGAAAAGGATATTAACCAAGGAACCCTTGTAGTGTTCAATTTGGATCCCTCAGTATCAAATGATGATCTTCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAgagATCAGGGAAACACCACATAAGAGACaccataaatttattgaattttttgatgTTAGAGCAGCAGAGGCTGCTcttaaagcattaaatcaaaGTGACATTGCTGGGAAACGCATCAAACTTGAACCCAGCCGCCCTGGTGGAGCACGTCGAAAcTTGATGCAACAACTGAGTCAAGAACTGGAGCAAGATGAAGCTCAAACTTTTAGACACCAAGTGGGTTCACCTATTGGCAATTCTCCTCCTGGTAACTGGGCACAATTTGGTAGTCCAGTTGAACATAATGCATTAGGTTCTTTTAGCAAATCCCCTGGTTTGAATTTTGCCGGCCCAATGAATACCAACCTTTTGCCTGGATTGGCTGCAATTCTTTCTCCACATTTATCAAGCTCTCCAAAGATTGCACCAATTGGCAGGGACCTTGGAAGGGCTAATAATGCAAAGCAGATATTCATGAGCTCAGGATCATCACAAGGAGCTGCTTTTCAGCATTCTACGTCCTTTCCTGAGCAAAAAGTAAATGCAATTCCTAGGCCTATATCTACTTTTGGTGAATCAAATTCAAGTTTGTCAAGTATTGGAACATTGTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTCCTTACTCAGAGCATTCAAACACATCTGCCTGGTCTTCATCTTCTGTGGGGCTTCCATTTACTTCCAGTGGACAAAGGCAGGGTTTCCCATATACTAGTCAGCACAGTTCTTTTCTTGGTTCTCATCCATGTCATCATGTGGGATCTGCTCCATCTGGCCTTCCTCTTGATAGACATTTTAGCTACTTCCCAGAATCACCTGAAACTTCTCACAAGAGCTCAGTTGCGATTGGGAATATGAATCACAGTGATGGGAATATTTTAATGAACATGGGTGGTCATGCATCTCTAGGTGTCAGTATTGGGCTTTCACTAAATACTTCTGAAATGAGTTCACCCAATTTCAGAATGATGTCACTGCCCAGGCATGGTTCCCTGTTCCTTGGAAATGATTTTTATTCTGGACCAGGAGCTACAAACACTGATGGATTAGCGGAACGTGGTCGAAGTAGGCGACCTGACAATAATGGGAACCAAGTTGATAGTAAGAAGCAGTATCAGCTTGATTTGGACAAAATTATGAGTGGGGAAGACACAAGGACTactttaatgattaaaaacatTCCTAACAAGTACACTTCAAAGATGCTGCTTGCTGCAATTGATGAGAATCACCGGGGTAGTTATGACTTTCTCTACTTGCCAATTGACTTTAAGAACAAGTGTAACGTGGGCTATGCTTTTATCAATATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCATTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCCCTAGCATATGCGCGGATCCAGGGAAAGGGTGCACTAGTGACACATTTTCAGAATTCAAGCCTAATGAATGAGGATAAGTGGTGCCGGCCAATTCTCTTTCATTCCAAGGGCCAAGAGATTGGCGACCAGGAACATTTCCTCTCAAGCAATTTGAATATATGCATTCGTCAACCAGATGGTTCTTACTCAGGTGATTTGTTGGAGAGTCCCAAGGGCAATTTGGAAGAAAAGCTAGAGAAAGATTAA 2577 0.4109 MDKHSGNSMPAHGATGPSEIFSLNVAKKVGSSAWGIPGGTDVFHASSDASLFCSSLPVLPHQKLNITDSEHYGQSVNDNWPVLGKVLKEVEGQDPLGHIEISAVGNMLPDDEDELLAGITDDFELSGLPSQLEDLDENDLFGSGGGFEMDFEPQESLSIGISKISLSDEVHSNGIGHYAIPNGMGTVVGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTSCKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFFDVRAAEAALKALNQSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEAQTFRHQVGSPIGNSPPGNWAQFGSPVEHNALGSFSKSPGLNFAGPMNTNLLPGLAAILSPHLSSSPKIAPIGRDLGRANNAKQIFMSSGSSQGAAFQHSTSFPEQKVNAIPRPISTFGESNSSLSSIGTLSGPQFLWGSPTPYSEHSNTSAWSSSSVGLPFTSSGQRQGFPYTSQHSSFLGSHPCHHVGSAPSGLPLDRHFSYFPESPETSHKSSVAIGNMNHSDGNILMNMGGHASLGVSIGLSLNTSEMSSPNFRMMSLPRHGSLFLGNDFYSGPGATNTDGLAERGRSRRPDNNGNQVDSKKQYQLDLDKIMSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGSYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKGALVTHFQNSSLMNEDKWCRPILFHSKGQEIGDQEHFLSSNLNICIRQPDGSYSGDLLESPKGNLEEKLEKD 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3399 858 PANTHER RNA RECOGNITION MOTIF-CONTAINING 10 854 - -
Ssu6g3399 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Ssu6g3399 858 Gene3D - 283 381 IPR012677 -
Ssu6g3399 858 Pfam RNA recognition motif 2 698 794 IPR007201 -
Ssu6g3399 858 CDD RRM1_MEI2_like 198 274 IPR034453 -
Ssu6g3399 858 SUPERFAMILY RNA-binding domain, RBD 700 784 IPR035979 GO:0003676
Ssu6g3399 858 CDD RRM3_MEI2_like 701 786 IPR034454 -
Ssu6g3399 858 Gene3D - 189 282 IPR012677 -
Ssu6g3399 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Ssu6g3399 858 PANTHER PROTEIN MEI2-LIKE 2 10 854 - -
Ssu6g3399 858 MobiDBLite consensus disorder prediction 656 681 - -
Ssu6g3399 858 CDD RRM2_MEI2_like 283 353 - -
Ssu6g3399 858 SMART rrm1_1 200 268 IPR000504 GO:0003723
Ssu6g3399 858 SMART rrm1_1 285 353 IPR000504 GO:0003723
Ssu6g3399 858 SMART rrm1_1 700 776 IPR000504 GO:0003723
Ssu6g3399 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Ssu6g3399 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Ssu6g3399 858 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3399 Ssu-Chr6 76475929 76482316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3399 139 392 Eukaryotic Initiation Factors Gene Family AT1G71770 25.000 9.50e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3399 - - gmx:100812324 1435.24