Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3396 ATGGTGTTCCCAATGGTGCTCCTCAGGCTTGCAGACTGGGTCCTGTACCAGCTGCTTGCCAACTCATGTTATAGAGCAGCaaggaaaatgaaaagttaTGGGTTACATTTGGGGTATCTGTCACCTAAACCACCCCATCAACCTTCCTCTTTACCTAGTATAACCAAATGTGATTTGGAGGGTAGAGGATCTCAAACACTTGCTTGTGACATTCATAGAGTCCTTTTGAGGTCCCACTCCTTCTTTCCTTATTACATGCTTGTTGCCTTTGAAGGTGGCAGCATTTTCAGGGCACTTCTCTTGCTTTTGTCTTGTCCTGTGCTGTGGATTTTAGACCATGAACTAAAGCTTAGGGTCATGACCTTCATCACCTTTTGTGGGCTAAGAATTAGTGTCATGGAAAGTATGTCAAGGGCAGTTTTGCCCAAGTTTTATTTGGAGAATCTCAACCCCCATGCTTATGAGGTTCTGGCCTCAGCAGGTTCTAAAGTTGTCTTCACAAGTGTGCCTAGAGTTATGGTAGAAGGGTTTCTTAAGGAGTATTTGAGTGTCGGTGCTGTTGTAGGCACAGAGTTGCACACTGTTGGTTGCTACTTCAGTGGCTTGCTTTCTGGTTCTGGCTTACTTGTGAAGCACAGAGCAGTAAAGGATTATTTTGGAGACACAGAGCCTGATATTGGGGTTGGAAGCTCTAGTGTTCATGATCATCTTTTCCTCTCCCTTTGCAAGGAAGCGTATGTGGTGAACAATGAAGAGGGCAAGGGCAACCCAAGTTCAGTGTTGCCAAGAGACAAGTATCCAAAGCCCCTAATATTTCATGATGGAAGACTAGCATTCCTGCCTACTCCCTCAGCAACTCTATATTTGTTCATGTGGTTTCCAATTGGAATTCTTTTGGCCATTTATAGAATCCTTCTGGGTATTTTACTTCCTTATGGATCGGCAATGACCTTGGGGGTTTGGAGTGGTATAAATCTGCATGTAAAGGGCAGTGGCCCGGAAAAATCAGAGCAAAACAAAGGGGTCCTCTATGTCTGCTCCCACAGGACTCTCCTTGATCCTGTTTTCCTAAGCACATGTTTAGCAAAGCCTTTGACTGCAGTCACATACAGCTTAAGCAAGGTGTCTGAGTTGATAGCCCCTATTAGGACAGTGAGACTAACGAGGGACAGAAAACAAGATGGTGATACCATGCAAAGGCTCCTTAGAGAAGGGGATTTGGTGGTGTGTCCTGAAGGAACAACTTGTAGAGAACCATATTTATTAAGGTTCAGCTCACTGTTTGCAGAATTGGCTGATGAGATTGTGCCTGTGGCTATCAATACTCATGTGAGCATGTTCTATGGGACCACTGCAAGCGGGTTGAAATGCCTGGACCCCATTTTCTTTCTCATGAATCCAAGGCCTAGCTATTATATTGAGGTTCTGGGGAAAGTTCCAAGAGAACTTACTTGTGCTGGAGGAAGGTCAAGCTGTGAAGTGGCAAACTATATACAGAAACAGTTGGCTGATGCTTTGGGATTTGAGTGCACCACACTCACAAGGAGGGATAAATACTTGATGCTAGCAGGGAATGAAGGGATTGTCCAAGAAGACAAGTGGAGAAAATGCTATTGA 1617 0.4428 MVFPMVLLRLADWVLYQLLANSCYRAARKMKSYGLHLGYLSPKPPHQPSSLPSITKCDLEGRGSQTLACDIHRVLLRSHSFFPYYMLVAFEGGSIFRALLLLLSCPVLWILDHELKLRVMTFITFCGLRISVMESMSRAVLPKFYLENLNPHAYEVLASAGSKVVFTSVPRVMVEGFLKEYLSVGAVVGTELHTVGCYFSGLLSGSGLLVKHRAVKDYFGDTEPDIGVGSSSVHDHLFLSLCKEAYVVNNEEGKGNPSSVLPRDKYPKPLIFHDGRLAFLPTPSATLYLFMWFPIGILLAIYRILLGILLPYGSAMTLGVWSGINLHVKGSGPEKSEQNKGVLYVCSHRTLLDPVFLSTCLAKPLTAVTYSLSKVSELIAPIRTVRLTRDRKQDGDTMQRLLREGDLVVCPEGTTCREPYLLRFSSLFAELADEIVPVAINTHVSMFYGTTASGLKCLDPIFFLMNPRPSYYIEVLGKVPRELTCAGGRSSCEVANYIQKQLADALGFECTTLTRRDKYLMLAGNEGIVQEDKWRKCY 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3396 538 PANTHER GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1 19 532 - -
Ssu6g3396 538 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 266 530 - -
Ssu6g3396 538 SMART plsc_2 342 443 IPR002123 GO:0016746
Ssu6g3396 538 Pfam Acyltransferase 328 435 IPR002123 GO:0016746
Ssu6g3396 538 PANTHER ANCIENT UBIQUITOUS PROTEIN 19 532 - -
Ssu6g3396 538 CDD LPLAT 326 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3396 Ssu-Chr6 76453137 76455259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3396 1 530 Acyl Lipid Metabolism Gene Families AT1G06520 57.823 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3396 K13508 - gmx:100803875 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3396 6 76453137 76455259 Ssu9g0841 9 36948007 36950275 PCT