Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3393 ATGGATCGAAAGCAAGAACAAGACAAGGGGAACTCAAACATGTCTAGCATTGACGTTACTCTAATGTCTCCCAAAGTCCCAAAAGCAGTTTCACCAGTGTCTTCTGCAGCGGAGGGGGACACCTTAAGGCGACCCCGCGGCCGGCCGGCCGGCTCCAAAAACAAACCCAAGCCACCAATAATCGTCACCAGAGATAGTGCTAATGCACTGAAGGCTCATGCCATGGAAGTGAGCTCTGGCTGTGACGTGAATGAAAGTTTGTTGAACTTTGCAAGGAGAAAGCAACGTGGCCTTTACATACTCAATGGGACAGGCTGTGTAACAAATGTAACATTGCGCCAGCCGGGCTCATCTGGTGCCATTGTGACCCTTCATGGCCGATTTGAGATTCTATCACTGCTGGGGTCAATCCTTCCCCCACCAGCTCCCCCAGGGATCACAGGCCTCACAATTTACCTGGCAGGTGCTCAAGGGCAAGTTGTGGGAGGTGCTGTGGTTGGTTCTTTGATTGCTTCAGGACCTGTTGTAATCATGGCTGCATCATTCATGCATGCTACTTTCGATCGTCTGCCGTTGGAAGATGATGAACTTGCTGCTGCAATGCACAATCAGCATTACCAAAATGGACGCGCCCACCATCTTGATATCTCTGACTTATATGCAATGCCACAGAACCTGCTCATGAATGGTACAATGCCCCCAGAGATATACTCTTGGGCACCAGGGCGGAACTTGTCAAAAACCTGA 747 0.502 MDRKQEQDKGNSNMSSIDVTLMSPKVPKAVSPVSSAAEGDTLRRPRGRPAGSKNKPKPPIIVTRDSANALKAHAMEVSSGCDVNESLLNFARRKQRGLYILNGTGCVTNVTLRQPGSSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGSLIASGPVVIMAASFMHATFDRLPLEDDELAAAMHNQHYQNGRAHHLDISDLYAMPQNLLMNGTMPPEIYSWAPGRNLSKT 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3393 248 Pfam Plants and Prokaryotes Conserved (PCC) domain 72 182 IPR005175 -
Ssu6g3393 248 Gene3D - 71 207 - -
Ssu6g3393 248 ProSiteProfiles PPC domain profile profile. 67 205 IPR005175 -
Ssu6g3393 248 SUPERFAMILY AF0104/ALDC/Ptd012-like 67 199 - -
Ssu6g3393 248 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 16 3 247 - -
Ssu6g3393 248 MobiDBLite consensus disorder prediction 1 60 - -
Ssu6g3393 248 CDD DUF296 73 153 IPR005175 -
Ssu6g3393 248 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 247 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3393 Ssu-Chr6 76415891 76416637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3393 26 245 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 71.818 3.46e-103 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3393 - - vra:106765118 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3393 6 76415891 76416637 Ssu6g3393 6 76415891 76416637 ECH