Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3392 ATGCACCATGCAGCAGCGCCTCCTGAGCCTGCTATAGGAGCAGTCACAGTGCACTTTGTTGAGGACCTGAATTGGGATGACAGTATTTATCTCTCCATGACTTCGGTTACAACGGTTGGTTATGGGGATTATTCTTTCAGAACTGTTATCGGAAGATGCTTTGCAATTGTATGGCTTTTGGTAAGCACACTGGCAGTTGCCAGGGCCTTTATATACCTCACTGAATATAGTATTCATAAGAGAAATCGTAAGATGGCAAAATGGGTTCTTCAGAAGAAGATAACCTTATCAGATTTAGTGGCTGCAGACCTTGATAATGATGGATCAATCAGTAAGTCAGAGTTTGTCATATACAAGCTTAAGCAAATGGGGAAGATTACTGAGGTAGACATTCTGCAAATAAGCAAACAATTTGATTCCTTGGAACATGGCATGTATGGCAAGATTACTCTTGCTGACCTCATGGAAACTGTCTAA 477 0.413 MHHAAAPPEPAIGAVTVHFVEDLNWDDSIYLSMTSVTTVGYGDYSFRTVIGRCFAIVWLLVSTLAVARAFIYLTEYSIHKRNRKMAKWVLQKKITLSDLVAADLDNDGSISKSEFVIYKLKQMGKITEVDILQISKQFDSLEHGMYGKITLADLMETV 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3392 158 SUPERFAMILY Voltage-gated potassium channels 12 94 - -
Ssu6g3392 158 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 12 154 IPR003280 GO:0005267|GO:0016020|GO:0071805
Ssu6g3392 158 Gene3D - 10 100 - -
Ssu6g3392 158 Pfam Ion channel 13 70 IPR013099 -
Ssu6g3392 158 ProSitePatterns EF-hand calcium-binding domain. 103 115 IPR018247 -
Ssu6g3392 158 PANTHER OS01G0696100 PROTEIN 12 154 - -
Ssu6g3392 158 SUPERFAMILY EF-hand 101 155 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3392 Ssu-Chr6 76405035 76406536 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3392 11 156 Ion Channels AT4G18160 60.274 1.21e-57 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3392 K05389 - gmx:100789639 275.789