Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3389 ATGCAGCAGCCCCTCCTGAGCCCTTGCTCCAGGAAAGAAATAGACTCACCAAGCAGACCATCACCCAAGGAACTAAGCGTCCATGATCTTGATCTTGCCCCATCACTGCTCCAATCTTGTTCTCCTCATATCACCAATGAAGCCAAGAGCTCTCCTATTAACCTCATAGCCAACTTGGTCTTCAAGAAAGGGAAGATTATCCATCGCTCTCGCTCTGCTCCACCCCTATTATTCACTGACAAGGGGGTAGATTTTCATGAGCCCTCTGAACCATATAAGTCTTCATCTTCAATAGTTAGACTATCCTTTATTGGTGTTTTCTTGTATGTGGCAACTGGGGTAGCAGTGTTCATGACTAGTGGGAGTTTCAGGGGCACTAGCACTTTCAGGCCTGTAGATGCTGTGTACTTTACAATGGTAACTCTCTGCACTATTGGGTATGGAGATATCGTTCCTGACTCCACGTTTACCAAGATCTTTACGTGTGGTTTCATTTTGGTGGGTTTTGGATTTCTTGGTTTTCTGCTCAATGGGTTGGTTGCATACATTTGTGATACACAAGAGGCATTCTTGTTGAGCATGATGGATGAGAATCGACATAAGAATATTCTCATGACGTatatggttgatgaagagaaaggaagaaTGAGGATAAGAACCAAAGTTTGTCTGGCTTTGGCTGTTGTCATTGGCTGCATTGCTATAGGAACAGTCACAGTGCACTTTGCTGAGGACCTGAATTGGGATGACAGTATTTATCTCTCCATGACTTCTGTTACAACGGTTGGTTATGGGGATTATTCTTTCAGAACAGTAACCGGAAGATGCTTTGCAATTATATGGCTTTTGGTAAGCACACTGGCAGTTACCAGGGCCTTTATATACCTCACTGAATATAGTATTCATAAGAGAAATCGTAAGATGGCAAAATGGGTTCTTCAGAAGAAGATAACCTTATCAGATTTAGTGGCTGCAGACCTTGATAATGATGGATCAATCAGTAAGTCTGACTTTGTCATATACAAGCTTAAGCAAATGGGGAAGATTACTGAGATAGACATTATGCAGATAAGCAAACAATTTGATTCCTTGGAACATGGCATGTATGGCAAGATTACTCTTGCTGACCTCATGGAAACTGTCTAA 1146 0.4127 MQQPLLSPCSRKEIDSPSRPSPKELSVHDLDLAPSLLQSCSPHITNEAKSSPINLIANLVFKKGKIIHRSRSAPPLLFTDKGVDFHEPSEPYKSSSSIVRLSFIGVFLYVATGVAVFMTSGSFRGTSTFRPVDAVYFTMVTLCTIGYGDIVPDSTFTKIFTCGFILVGFGFLGFLLNGLVAYICDTQEAFLLSMMDENRHKNILMTYMVDEEKGRMRIRTKVCLALAVVIGCIAIGTVTVHFAEDLNWDDSIYLSMTSVTTVGYGDYSFRTVTGRCFAIIWLLVSTLAVTRAFIYLTEYSIHKRNRKMAKWVLQKKITLSDLVAADLDNDGSISKSDFVIYKLKQMGKITEIDIMQISKQFDSLEHGMYGKITLADLMETV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3389 381 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 47 376 IPR003280 GO:0005267|GO:0016020|GO:0071805
Ssu6g3389 381 MobiDBLite consensus disorder prediction 1 25 - -
Ssu6g3389 381 Gene3D - 91 203 - -
Ssu6g3389 381 Gene3D - 204 321 - -
Ssu6g3389 381 PRINTS Two pore domain K+ channel signature 140 168 IPR003280 GO:0005267|GO:0016020|GO:0071805
Ssu6g3389 381 PRINTS Two pore domain K+ channel signature 260 269 IPR003280 GO:0005267|GO:0016020|GO:0071805
Ssu6g3389 381 Pfam Ion channel 228 292 IPR013099 -
Ssu6g3389 381 Pfam Ion channel 107 182 IPR013099 -
Ssu6g3389 381 ProSitePatterns EF-hand calcium-binding domain. 326 338 IPR018247 -
Ssu6g3389 381 SUPERFAMILY Voltage-gated potassium channels 213 316 - -
Ssu6g3389 381 PANTHER OS01G0696100 PROTEIN 47 376 - -
Ssu6g3389 381 SUPERFAMILY Voltage-gated potassium channels 95 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3389 Ssu-Chr6 76382321 76384440 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3389 63 379 Ion Channels AT4G18160 49.221 2.67e-106 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3389 K05389 - gmx:100789639 638.647