Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3387 ATGGAGAATGAGAAGGACCGTTATTATGATCCGTTTCATTACAACCACCATGAACTCAACCACTCATCGAGCTTTCCATTCTTTAGGGACAACAACTCAACACCAAGCTCACAAAACTTTCAAGGGTTTGATCATAATAATCCTTCTCATCACACCACTTTCACTGACTACTTACATGGTTCCATGGATTACAACACTCTCTCAAGAGCCTTTGACTTGTCTTGCTCATCATCTGAAGTGATCTCCTCCATTGATGAAAACCCCAAGAAGCCTAGTGCAGGAGACTCAGCGGGGATCAGTGGGAACCAATCAACACCCAATTCATCGGTGTCTTCGTCATCTAATGAAGCTGAAGCAGTAATAGAAGAAGACTCAATTGCCAAAAGCCAGAAAGATAAGCAGCCAAAAGGGTGTGAACATGGAGATGAAAAGCCTAAGAAAGAGAACAAGcccaaaaagaaagagaaaaagccAAGAGAGCCTCGCTTTGCCTTCTTGACTAAAAGTGAGATCGACCACCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCGGTCAAGAATAGTCCGTACCCAAGGAGCTATTATAGATGCACCAGTCAGAAGTGCAGTGTAAAGAAAAGGGTGGAGAGGTCATTCCAAGACCCATCAATTGTGATCACAACATATGAAGGCCAACACAACCATCACTGTCCGGCAACACTCCGAGGCAGTGCTGCCAGCATGTTGTCATCACCTTCCTTTTTCGGTTCCTCTTATATGGGGTCAACCTTACCCCAAGATTTTCTTTCTCAGTTGCTACCAAGTTATAGCCAAAATGATCTCCAGAATCCAATGTTCCACCAAAACCTTTCCCATAATCTGCATCCCCAGCCGCAACAGCACCAGCATCAGCAGCAGTTCCAACTCTCTGGAGACTATGGTTTGTTGCAAGACCTACTACCATCATTCCAAGGCAAACAAGAGCCATGA 978 0.4346 MENEKDRYYDPFHYNHHELNHSSSFPFFRDNNSTPSSQNFQGFDHNNPSHHTTFTDYLHGSMDYNTLSRAFDLSCSSSEVISSIDENPKKPSAGDSAGISGNQSTPNSSVSSSSNEAEAVIEEDSIAKSQKDKQPKGCEHGDEKPKKENKPKKKEKKPREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCSVKKRVERSFQDPSIVITTYEGQHNHHCPATLRGSAASMLSSPSFFGSSYMGSTLPQDFLSQLLPSYSQNDLQNPMFHQNLSHNLHPQPQQHQHQQQFQLSGDYGLLQDLLPSFQGKQEP 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3387 325 ProSiteProfiles WRKY domain profile. 169 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g3387 325 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 3 319 IPR044810 GO:0003700
Ssu6g3387 325 SUPERFAMILY WRKY DNA-binding domain 167 234 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g3387 325 MobiDBLite consensus disorder prediction 26 47 - -
Ssu6g3387 325 Pfam WRKY DNA -binding domain 175 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g3387 325 MobiDBLite consensus disorder prediction 121 165 - -
Ssu6g3387 325 Gene3D WRKY domain 158 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g3387 325 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 3 319 - -
Ssu6g3387 325 MobiDBLite consensus disorder prediction 96 119 - -
Ssu6g3387 325 MobiDBLite consensus disorder prediction 82 165 - -
Ssu6g3387 325 MobiDBLite consensus disorder prediction 277 301 - -
Ssu6g3387 325 SMART WRKY_cls 174 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3387 Ssu-Chr6 76361487 76363360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3387 47 325 WRKY Transcription Factor Family AT4G18170 46.575 2.04e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu6g3387 WRKY 8.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3387 - - aprc:113847247 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3387 6 76361487 76363360 Ssu6g3387 6 76361487 76363360 ECH