Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3386 ATGTCATCCAACAGTTCTTTGAACGTGGAATTGTCAAAGAAGACGTCATTTTTGGGTTTGAAACGATGGGTTTTGATTGGGATAGGTGTTGGTGCATTTATAGTGCTGATTCTGTGTATATTATCGATATGGGTGATGTTTCGGAGAAAGTCTAGGAGATCTCTGGAGAAGTATTCTATATTCCAAATACCAAATATCTCAAAAGATATCGATGTTGACAAGGTTGGGGTGCAGAGTTCTCATGTTCAACCAGAAAATGTGGTTATTCCTATTCATGACAAGGCAAGTGATAAGAATTCAGATAATGTATCAGTTCGATTGGGGAATAGAAAATCTGGTGATCCTGATAATATCAGTCAGTGCAGCTCAATTTATCATCATGAGAGAGGATTTAGTTCATTGTCAGCGGAAGAAGGAAGCTCTGGGAATGTTAAGAAGCAATCTATGTCGTCACATGGAGGGCTAGCAACTGCCTCTCCTTTAGTTGGCTTGCCAGAATTTTCTCATCTTGGATGGGGCCACTGGTTTACACTTAGAGATCTGGAAATGGCAACCAATCGTTTCTCAACTGAGAACATTATTGGCGAGGGTGGATATGGGATTGTCTACAGGGGCAGACTGATTAATGGAACTGAGGTGGCAGTGAAGAAGCTTCTTAACAACTTGGGACAAGCTGAGAAAGAATTCAGGGTTGAGGTGGAAGCTATAGGCCATGTTAGACATAAGCATCTTGTGCGCCTTCTTGGATATTGTGTAGAAGGAGTaaatagGCTGCTTGTGTATGAATATGTGAACAATGGGAACTTAGAACAATGGTTACATGGAGACATGCACCAACATGGGACACTTACCTGGGAGGCCCGCATGAAAGTTATACTTGGCACAGCCAAAGCGCTTGCTTATTTACATGAAGCAATAGAACCAAAAGTTATTCACCGGGATATAAAGTCTAGCAACATATTGATTGATGATGAATTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATAACTACTAGAGTAATGGGAACATTTGGTTATGTGGCACCAGAATATGCCAACAGTGGTTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGTGTCCTCTTGCTGGAAGCAGTTACTGGAAGGGACCCTGTAGACTATGCACGTCCTGCTAGTGAGGTTAATCTAGTTGAATGGCTCAAAATGATGGTGGGGACAAGGAGGGCCGAAGAAGTCGTGGACTCAAGCCTTGAAGTTAAACCACCGGCACGTGCTTTGAAGCGCGCTCTTTTGGTTGCACTTAGGTGTATTGATCCTGATGCCAACAAGAGGCCAAAAATGAGTCAAGTTGTGAGGATGCTTGAAGCTGACGAATATCCATTTCGAGAGGatagaagaaatagaaagatTGGCACTGCCAGTACGGAAATTGAAAATGTGAAGGATATTTCTGGTCCATCTGATGCTGAAAAGAGGGGGCATTCTGAAAGCCACGTGCGGGAAACAACTCAAGGAGAGGATTGA 1539 0.4204 MSSNSSLNVELSKKTSFLGLKRWVLIGIGVGAFIVLILCILSIWVMFRRKSRRSLEKYSIFQIPNISKDIDVDKVGVQSSHVQPENVVIPIHDKASDKNSDNVSVRLGNRKSGDPDNISQCSSIYHHERGFSSLSAEEGSSGNVKKQSMSSHGGLATASPLVGLPEFSHLGWGHWFTLRDLEMATNRFSTENIIGEGGYGIVYRGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKHLVRLLGYCVEGVNRLLVYEYVNNGNLEQWLHGDMHQHGTLTWEARMKVILGTAKALAYLHEAIEPKVIHRDIKSSNILIDDEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLLLEAVTGRDPVDYARPASEVNLVEWLKMMVGTRRAEEVVDSSLEVKPPARALKRALLVALRCIDPDANKRPKMSQVVRMLEADEYPFREDRRNRKIGTASTEIENVKDISGPSDAEKRGHSESHVRETTQGED 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3386 512 MobiDBLite consensus disorder prediction 468 512 - -
Ssu6g3386 512 SUPERFAMILY Protein kinase-like (PK-like) 172 460 IPR011009 -
Ssu6g3386 512 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Ssu6g3386 512 Gene3D Transferase(Phosphotransferase) domain 1 264 475 - -
Ssu6g3386 512 Coils Coil 208 228 - -
Ssu6g3386 512 MobiDBLite consensus disorder prediction 93 118 - -
Ssu6g3386 512 Pfam Protein kinase domain 189 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3386 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Ssu6g3386 512 PANTHER OS01G0323000 PROTEIN 2 507 - -
Ssu6g3386 512 PANTHER RECEPTOR-LIKE KINASE PLANT 2 507 - -
Ssu6g3386 512 MobiDBLite consensus disorder prediction 488 512 - -
Ssu6g3386 512 ProSiteProfiles Protein kinase domain profile. 188 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3386 512 Gene3D Phosphorylase Kinase; domain 1 169 263 - -
Ssu6g3386 512 MobiDBLite consensus disorder prediction 101 118 - -
Ssu6g3386 512 SMART serkin_6 188 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3386 512 CDD STKc_IRAK 194 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3386 Ssu-Chr6 76339506 76343284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3386 19 462 Trihelix Transcription Factor Family AT1G70460 40.089 6.99e-96 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Ssu6g3386 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3386 - - gmx:100798916 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3386 6 76339506 76343284 Ssu6g3386 6 76339506 76343284 ECH