Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3377 ATGATCCGTTGTTGGTTAGCGCTGAGCAGTGCAACAGCAATTGACGGTGGCAATCGAAATCGGGGAACATGTTTGGAGATTGATTTTGTGGATTTTAATGTGGTTGTGATTATGGTTGAAGCAGTTTCACCAGTACCAGGTTGTGGGAAGGCTCTTCCTACCGAAACCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGGTATTTcttgagaaaattgaagaaGGTGAAGAAAAGCAACGGGCAAGTGCTAGCCATCAATGAGatttttgagaaaaatcctACCAAGATTAAGAATTATGGAATTTGGCTGCGTTATCAGAGTCGTACTGGTTATCACAATATGTACAAGGAATACCGAGATACTACTCTAAATGGTGCAGTTGAGCAAATGTACAATGAAATGGCATCTCGTCATAGGGTGAGGCATCCATGCATCCAGATAATTAAGACTGCAACCATCCCAGCTAAGCTGTGCAAAAGGGAGAGCACCAAGCAGTTCCACAATTCTAAAATCAAGTTCCCGTTGGTGTTCAAGAAGGTTAGGCCCCCAACTAGGAAGCTGAAGACAACATACAAGGCATCCAGGCCAAACCTTTTTATGTGA 645 0.4248 MIRCWLALSSATAIDGGNRNRGTCLEIDFVDFNVVVIMVEAVSPVPGCGKALPTETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRHPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3377 214 Gene3D - 48 107 - -
Ssu6g3377 214 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 49 164 IPR023573 GO:0003735|GO:0005840|GO:0006412
Ssu6g3377 214 Hamap 50S ribosomal protein L18Ae [rpl18a]. 49 105 IPR028877 -
Ssu6g3377 214 PANTHER 60S RIBOSOMAL PROTEIN L18A 49 173 - -
Ssu6g3377 214 PANTHER 60S RIBOSOMAL PROTEIN L18A 174 214 - -
Ssu6g3377 214 SUPERFAMILY RplX-like 107 182 - -
Ssu6g3377 214 Gene3D - 108 183 - -
Ssu6g3377 214 PANTHER 60S RIBOSOMAL PROTEIN L18A 49 173 IPR028877 -
Ssu6g3377 214 PANTHER 60S RIBOSOMAL PROTEIN L18A 174 214 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3377 Ssu-Chr6 76153895 76155765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3377 48 214 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 90.419 1.94e-113 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3377 K02882 K22683 gmx:100305604 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3377 6 76153895 76155765 Ssu6g3377 6 76153895 76155765 ECH