Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3371 ATGGAAGAAGGTCGCAAAGGGTATGTTCCAGTGCTAGTTGGCAAAGGGGGGTATATAGAGAAGATATGGATACCCATCAAAGCGATTCGGCATCCAACCATTGTTGAGTTGCTGGATCAATCTGTAGATGAGTTCGGATACCAGCAAGGTGTGCTTAGAATCATATACGATGCTAACAACTTCAAAGCCGTAATTGACAACGCATCCAAGAAGTACCTAGCAAATTACAAGTGTATTTGA 240 0.425 MEEGRKGYVPVLVGKGGYIEKIWIPIKAIRHPTIVELLDQSVDEFGYQQGVLRIIYDANNFKAVIDNASKKYLANYKCI 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3371 79 Pfam Auxin responsive protein 6 65 IPR003676 GO:0009733
Ssu6g3371 79 PANTHER SAUR-LIKE AUXIN-RESPONSIVE FAMILY PROTEIN 3 71 - -
Ssu6g3371 79 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 3 71 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3371 Ssu-Chr6 76082267 76082506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3371 6 78 Calmodulin-binding Proteins AT4G31320 34.615 3.83e-07 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3371 - K14488 pvu:PHAVU_008G194200g 103.219