Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3366 ATGGATGTGGCCAAGTTACATAACTCTGATGATGACAAGAAAGAAGATGAAGTTGTGCTTCCTGGGTTTAGATTCCATCCAAcagatgaagaacttgttgggTTTTATCTGAGGCGAAAGGTGGAGAAGAAGCCTCTAAAAATTGAACTCATCAAACAGATTGACATCTACAAACACGATCCATGGGATCTTCCAAAAGCGAGTTCTGTGGGGGAGAAGGAATGGTACTTCTTCTGCATAAGAGGGAGAAAATACAGGAACAGCATAAGGCCTAATAGGGTGACAGGGTCTGGATTTTGGAAAGCCACAGGGATTGACAAGCCAATATACTGTGTTAATGAACCCCCTCAATGCATTGGCCTAAAGAAATCATTGGTCTATTACCGCGGAAGTGCTGGTAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTCCCCCCAAATGGAAAAATTAGCAACAATCCACTAGCTAATGATGCCAATGATGTTCAAGAAGCtGAAGTGTGGACGCTATGCCGAATATTCAAACGAGTCCCATCTTACAAGAAGTACACACCAAATTTGAAAGACTCGGCACCAATCACGAAGCCAAACCCCACAAACTCTTCAAGTTCCAAAACATGCAGCTTGGAATCTGACAACGGCAAGCCATACTTGACTTTCACAAACTCACCACTCATTCAACAAAATGAAAGGAAACCAGTTATTGGGCATGTTGACGAACGTAACCAATTGTTCCTAGGTCAGTTAGGCAATGTAGCTCAGGCTCCAACATCGTTGTCTTACTCAAGTTTTTGGAATCATCATCAGGATGTGGAATTTGCTAATGAGAATTGGGATGATCTCACATCTGTGGTTCAGTTTGCTATTGATCCGTCCAGGGTTTCCGATTGTAaagaatttaatagattttaa 921 0.4104 MDVAKLHNSDDDKKEDEVVLPGFRFHPTDEELVGFYLRRKVEKKPLKIELIKQIDIYKHDPWDLPKASSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVNEPPQCIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKISNNPLANDANDVQEAEVWTLCRIFKRVPSYKKYTPNLKDSAPITKPNPTNSSSSKTCSLESDNGKPYLTFTNSPLIQQNERKPVIGHVDERNQLFLGQLGNVAQAPTSLSYSSFWNHHQDVEFANENWDDLTSVVQFAIDPSRVSDCKEFNRF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3366 306 PANTHER - 3 305 - -
Ssu6g3366 306 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 305 - -
Ssu6g3366 306 MobiDBLite consensus disorder prediction 188 213 - -
Ssu6g3366 306 Gene3D NAC domain 28 182 IPR036093 GO:0003677|GO:0006355
Ssu6g3366 306 Pfam No apical meristem (NAM) protein 21 147 IPR003441 GO:0003677|GO:0006355
Ssu6g3366 306 ProSiteProfiles NAC domain profile. 19 179 IPR003441 GO:0003677|GO:0006355
Ssu6g3366 306 SUPERFAMILY NAC domain 18 178 IPR036093 GO:0003677|GO:0006355
Ssu6g3366 306 MobiDBLite consensus disorder prediction 193 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3366 Ssu-Chr6 76037049 76040697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3366 9 180 NAC Transcription Factor Family AT5G39820 60.326 1.77e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu6g3366 NAM 5.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3366 - - gsj:114384349 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3366 6 76037049 76040697 Ssu6g3366 6 76037049 76040697 ECH
Ssu9g0819 9 35561600 35568003 Ssu6g3366 6 76037049 76040697 PCT