Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3359 ATGCTGAGGCGCTTGTTAGGGTTCTTGCTACGCTTCTTCTTCCGATCCTTCGCCAAAGCCATGGGCTGTTTCTTCGCTTGCTTCAGGATCAGAGATAAAGACAATCGCCGCCTCCACACGTCACAATTGACTTTGACCTCCACTCGTTCCACCGATGTTCTGATATCTCGAAATCGCTCTTCTTCTTTATCATCTGAAGAAGATAGAGATGATTCTGCGCGAAATGACGATGTGGCGTTTCAGGGAGATTTTCAGGGGCTTAAGGACGAGGCTAAGTTTCTTAAAGCTTGTGGAACCTTACCAGGAACACCTGCTGAAATTCGTAAAGCATCTGAGAAATTGAAAGCATCACCCTCTTCTGATAAAGATTCTGACCCTTCAAGATTTCATTCTTGGCTTCCTAACATGTCTGTCGAGAAACTGCAGCTGGATGTCCAACCATTTGATCCACCAACTCCCATAAAACTTTGCCAAGAATGGGGAAATAACGTGGATTCTTTTGAGAACACACCAAGCAGGTGTATCTCCAAAGCAGAAGACACTCAAAATGACTCTGTTGACTATATGGAAAAAAGTTGGGCAGGGAACCTTCATACTGCAGATAGGGCTGAAAGGAATGCAGCTTCAGTTTCACCTTTGCCAGCCACAAAAACAGAGAGAAAGAATAAGTCTGTTCGTTTTGAAAGTGATACTGACTTGACATCCTATGGAAGCTCATCAGATGATTGGCATATAAAGAAAAGCAAGTCACCAAATAACCAAAGTGCATATAAACCATCTCCTTATCCTACCCCGTTGAAGTTATTTGACGAGATGCAAACACCAGGAACTGTGTATCCTGCATCATTAGAAGAGTTACGTAATGGTAAGGCTAAGGCTCAAGTTCGATCCCAGTTTGTCTATCCAACTCACAACCAAGGTGAGAATGTCTTCCGGTACAAAATACTTGAGGAGAAAGATTTTAACCCTAAAGAAGATTCAAGTGAGCTGAGTGATTCGGTTGAGCAAGCTCAAAATAGAACTCCTACCCCAGAAAAAGGGTCgaagaaaatttcaaatggaaATGAAGCTGAGGTGAAATCAAATTTGTCTTCTACATCAAGTCCTGTATCAATCATTGTGGAGCATTCCCCTATTTCTCCCAAGTGGTGGGATGGCAATGGCATCCCAAATACAACAACTAAGTACAAGGAGGACCAGAAAGTAAAATGGCATGCGACCCCGTTTGAAGAGAGGCTGGATAAGGCGCTGTCAGAGGAGAATTTTATATCTCAAAGGAAGTTTGTTTGTGAAAAACCAGTGGCATTTGATGAGATTGAAGAAAGTGATACTGCATTATCTCAGCAACAGTCTGAAACTCATTTGCTGTCTGTATATGCCCATCCCATCCCGTTGTAG 1398 0.4235 MLRRLLGFLLRFFFRSFAKAMGCFFACFRIRDKDNRRLHTSQLTLTSTRSTDVLISRNRSSSLSSEEDRDDSARNDDVAFQGDFQGLKDEAKFLKACGTLPGTPAEIRKASEKLKASPSSDKDSDPSRFHSWLPNMSVEKLQLDVQPFDPPTPIKLCQEWGNNVDSFENTPSRCISKAEDTQNDSVDYMEKSWAGNLHTADRAERNAASVSPLPATKTERKNKSVRFESDTDLTSYGSSSDDWHIKKSKSPNNQSAYKPSPYPTPLKLFDEMQTPGTVYPASLEELRNGKAKAQVRSQFVYPTHNQGENVFRYKILEEKDFNPKEDSSELSDSVEQAQNRTPTPEKGSKKISNGNEAEVKSNLSSTSSPVSIIVEHSPISPKWWDGNGIPNTTTKYKEDQKVKWHATPFEERLDKALSEENFISQRKFVCEKPVAFDEIEESDTALSQQQSETHLLSVYAHPIPL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3359 465 MobiDBLite consensus disorder prediction 332 367 - -
Ssu6g3359 465 MobiDBLite consensus disorder prediction 322 367 - -
Ssu6g3359 465 MobiDBLite consensus disorder prediction 203 269 - -
Ssu6g3359 465 PANTHER ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) AMIDOTRANSFERASE SUBUNIT 13 447 IPR039300 GO:0007142
Ssu6g3359 465 MobiDBLite consensus disorder prediction 110 130 - -
Ssu6g3359 465 PANTHER - 13 447 - -
Ssu6g3359 465 MobiDBLite consensus disorder prediction 110 128 - -
Ssu6g3359 465 MobiDBLite consensus disorder prediction 56 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3359 Ssu-Chr6 75854694 75857779 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3359 - - gmx:100799259 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3359 6 75854694 75857779 Ssu6g3359 6 75854694 75857779 ECH
Ssu6g3359 6 75854694 75857779 Ssu9g0811 9 35391761 35399612 PCT