Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3357 ATGGATAACTCAAATGACTCATCATCATCCTTGAGTTTTGTATCATCTCACCTCTCACACGGTTGTAGCAATCATAACGTGTCTTCCTCCACCAGCAACGAGCATGgggaaaatattgaaattttgagtcTGAGTAAGCTCAGTGGAAGCCTTGAGAAGCTACTGATTGATGCTGAGTATGATTATAGTGATGCTGAGATTCTTGTTGAAGACATCCCTGTGGGTATTCATCGCTGTGTATTGGCGTCGCGAAGTCCCTTTTTTCATGAGCTTTTTAAGAAAGGAATTGATGGATCAGGGAAGGAAGGAAAGCCAAGGTATCTCATGTCAGATTTGGTGCCTTATGGCGCCGTTGGATATGAAGCTTTCCAGGTTTTCTTGTACTATTTGTATACTGGAAGGCTAAAGGCTTCACCAACAGAAGTGACAATGTGTGTTGATGAAACATGTATCCATGATGCATGCCGCCCTGCTATCAATTATGCTTTGGAGCTGATGTATGCTTCTGCCACTTTTCAGATGAAAGAGCTGGTTCTACTTTTTCAGCGGCATCTCCTAAATTTTGTTGAGAAGGCTCTTGTGGAAGATGTCATTCCTATTCTAATGGCTGCCTTCAACTGCCACCTAGACCAGCTTCTCTCCCGGTGCATTCAGAGAGTAGCAAGGTCTGACTTTGACAACATATCTTTGGAAAAAGAGCTCCCTCGTGAAGTTGTGACTGAAATCAAATCACTCCGACCCCAATCTCAGCCAGAATCCTCACCTAATGCAAGGGAAGTGGAGCCTTTGAATGAAAAGGGTATCAGGAGAATCCATAAGGCATTGGACTCTGACGATGTTGAGCTACTGAAGCTTCTTCTAAATGAGTCCAGTGTCACTCTAGATGATGCCTATGCCCTGCACTATGCCTGTGCCTATAGTGATTCTAAGGTTGTTCAAGAAGTTCTTAGTCTAGGCTTGGCTAATATCCTCCGCAGAAGCTCCCGAGGGTACACAGTTCTTCATGTGGCTGCAAGGCGAAAGGATCCGTCCATTTTGGTAGCACTACTGAACAAAGGGGCCGACGCGTCAGATATCACTCCAGATGGACAAACTGCTCTTGCAATTTGTCAGAGGTTGACAAGACGCAAGGATTATCATGAGAAAACAGTGCAGGGTAAGGAATCTAACAAGGACAGGCTCTGTGTTGATGTCctggagagggagatgagaagAAATTCTATGACTGTGATTGTGTCTGTTTCATCACAGTTGACAGCTGCTGATTTGCACAGGAGACTGGATTACCTTGAAGATAGAGTTGCATTTGCTAGGCTGTTCTTTCCCGCTGAGGCTAGGGTAGCCATTGAGAATGCTGAGGCAGATTCATCATCGCTGGATGCAAGCTCATCAGCTTTGAAGGGTCCAAATGGCCATCTAAAAGAAGTGGATCTAAATGAATCTCTCCCTGCTCGAACCAGAAAACTTCAGTTAAGATTGCATGCCCTTATGAAAACAGTTGAGAATGGAAGGCGCTTCTTTCCCCATTGCTCTGAAGTGCTTGATAAGTTTCTGGAAGACGATATGCCAGATGTTTTCGTCCTAGAGAAGGGCAGTGAAGAAGAGCAGAGAATCAAGAAAGCACGCTTCATGGAACTTAAAGATGATGTGCAGAAGGCATTTTACAAGGATATGGCTGAAAATAACCATTCGGGGTTTTCATCTTCAGTGTCTTCCTCATCATCCTCAACTCGTAGGGAAGGTCTTAACCACAGAGTGAGGAAAAAATGA 1770 0.4339 MDNSNDSSSSLSFVSSHLSHGCSNHNVSSSTSNEHGENIEILSLSKLSGSLEKLLIDAEYDYSDAEILVEDIPVGIHRCVLASRSPFFHELFKKGIDGSGKEGKPRYLMSDLVPYGAVGYEAFQVFLYYLYTGRLKASPTEVTMCVDETCIHDACRPAINYALELMYASATFQMKELVLLFQRHLLNFVEKALVEDVIPILMAAFNCHLDQLLSRCIQRVARSDFDNISLEKELPREVVTEIKSLRPQSQPESSPNAREVEPLNEKGIRRIHKALDSDDVELLKLLLNESSVTLDDAYALHYACAYSDSKVVQEVLSLGLANILRRSSRGYTVLHVAARRKDPSILVALLNKGADASDITPDGQTALAICQRLTRRKDYHEKTVQGKESNKDRLCVDVLEREMRRNSMTVIVSVSSQLTAADLHRRLDYLEDRVAFARLFFPAEARVAIENAEADSSSLDASSSALKGPNGHLKEVDLNESLPARTRKLQLRLHALMKTVENGRRFFPHCSEVLDKFLEDDMPDVFVLEKGSEEEQRIKKARFMELKDDVQKAFYKDMAENNHSGFSSSVSSSSSSTRREGLNHRVRKK 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3357 589 Pfam NPR1/NIM1 like defence protein C terminal 371 573 IPR021094 -
Ssu6g3357 589 ProSiteProfiles BTB domain profile. 63 139 IPR000210 GO:0005515
Ssu6g3357 589 MobiDBLite consensus disorder prediction 458 479 - -
Ssu6g3357 589 SMART ANK_2a 266 294 IPR002110 GO:0005515
Ssu6g3357 589 SMART ANK_2a 329 358 IPR002110 GO:0005515
Ssu6g3357 589 SMART ANK_2a 295 325 IPR002110 GO:0005515
Ssu6g3357 589 Gene3D - 263 403 IPR036770 -
Ssu6g3357 589 ProSiteProfiles Ankyrin repeat profile. 329 361 IPR002110 GO:0005515
Ssu6g3357 589 PANTHER REGULATORY PROTEIN NPR3 1 587 IPR044292 GO:0009862|GO:2000022|GO:2000031
Ssu6g3357 589 Pfam Domain of unknown function (DUF3420) 224 272 IPR024228 -
Ssu6g3357 589 SMART BTB_4 63 189 IPR000210 GO:0005515
Ssu6g3357 589 SUPERFAMILY Ankyrin repeat 259 372 IPR036770 -
Ssu6g3357 589 SUPERFAMILY POZ domain 60 187 IPR011333 -
Ssu6g3357 589 MobiDBLite consensus disorder prediction 561 589 - -
Ssu6g3357 589 Pfam Ankyrin repeats (many copies) 320 369 IPR002110 GO:0005515
Ssu6g3357 589 ProSiteProfiles Ankyrin repeat region circular profile. 329 357 - -
Ssu6g3357 589 MobiDBLite consensus disorder prediction 561 579 - -
Ssu6g3357 589 Gene3D Potassium Channel Kv1.1; Chain A 29 221 IPR011333 -
Ssu6g3357 589 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 1 587 - -
Ssu6g3357 589 Pfam BTB/POZ domain 60 147 IPR000210 GO:0005515
Ssu6g3357 589 CDD BTB_POZ_NPR_plant 52 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3357 Ssu-Chr6 75762940 75766256 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ssu6g3357 NPR1_like_C 3.2e-79 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3357 K14508 - gmx:100814739 983.786