Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3348 ATGAACCACAGTATTCCAGGTTGGGATTTTGAGAGTGATACTTGTCTCACCAACCAAAGAAAGCTCATAGGGCCAGACCAAGAACTTGTAGAGCTCTTGTGGCAAAATGGGCAAGTAGTTATGCACAGCCAAACACATAAGAAACCAGTTGGGAATTCATCTAACTTCAGACAGGTTCAGAAAAATGATCaatcaacattaaggactagtGGGCCATATGGGAACTCAAGCAACTTGGATCAAGAAAACTCGGTCCCATGGATCCAATACCCACTTGAGGACCCATTGGAACAAGAATTTTGTTCAAACATTTTATCTGAATTACCACCTTGTGAAGTTGAATCTCACAAGCCAATCAGGCAATTGGAAGAGGACAAGTTTGCCAATTTTTTTGCCTCTAGTGCCCCCCATCCAACTTCAAGTTCACAATCTCTACCACCTAACATGAAACCCTCCTGTGTTCAGGGATTCCAAGGGAATCCTATGCCTGCTCCAAGATTTCATGCACCTGATCCATCCCACAAAATCAATGACTTTGATGCATCACGAAAGGTCCTAAATTTTCCTCACTTTTCAACACCCCGTAATGTCTCCTCAGCACCTCAAAAAACTACTGCTAACCTGTCACAAAGTGAGGCTAGAGAGTACTCAGTGATCACAGTTGGTTCAAGTCACTGTGGCAGCAGTCACATCCCTCAGGACCAAGATATTAGCAGGGCTTCAAGAAACGCTGGTTGGGTCACTACTAATAATACTACTTTATCTACTGAGCCTGAAGCTGTCAGAGATTGTGTCCAGAGACCAACTCCTAGGAATGATAAAGGAAAATCAGAGTTGATTGAAGCAACTGTGACTTCATCTTCCGGTGGCTCAGGCAGTACTGGTATTGGAAGAACTTGTTCCCTATCAACAAGAGATCATGGCCTAAAGAGGAAAGGAACAGAAGAAGAAGCATCAGAGGAACAAAGTGAGGCCACAGAACTTAAATCAGCTGATGGAAACAAGGCATCTCAGCGGACGGGGTCTTCCAGAAGGAACCGTGCAGCTGAAGTGCATAATCTATCAGAAAGGAGAAGAAGAGATAGGATCAACGAGAAGATGAGGGTATTGCAGCAACTGATACCTAACAGTAACAAGACGGACAAAGCATCCATGTTAGAAGAGGCAATCGAATACTTGAAATCACTTCAGTTTCAGCTTCAGGTAATGTGGATGGGGGCTGGCATGACACCAGTGATGTTTCCAGGAATTCAGCACTATATGTCACAAATGGGAATGGGAATGGCTGCAGCTTCTCTGGCTTCCATTCACAATCCGATGCATGATCAGTCCATGTCTGTGCCTCAGATACCAAACCAGACTTTGATGTGCCAAAATCCAGTTTTGGGTGCGTTTAATTACCAGAACCAGATGCAAATGCAAAACCCGTGCCTTTCAGAACAATATGCACGTTACATGGGTTACCATCTGATGCAAAGCGCCTCTcagCCAATGAATGCGTCCAGATATGGTTCCCAAGCAGTGCAACACAGTCAAACAATGATTGCACCCACCAATAATAGCAGCGGACCCATGAGCGGAACAGCTAATATTGATGACGTCGTTAGTGGCAGAACGAGTTCTTCCACCTTTAACTGA 1638 0.4396 MNHSIPGWDFESDTCLTNQRKLIGPDQELVELLWQNGQVVMHSQTHKKPVGNSSNFRQVQKNDQSTLRTSGPYGNSSNLDQENSVPWIQYPLEDPLEQEFCSNILSELPPCEVESHKPIRQLEEDKFANFFASSAPHPTSSSQSLPPNMKPSCVQGFQGNPMPAPRFHAPDPSHKINDFDASRKVLNFPHFSTPRNVSSAPQKTTANLSQSEAREYSVITVGSSHCGSSHIPQDQDISRASRNAGWVTTNNTTLSTEPEAVRDCVQRPTPRNDKGKSELIEATVTSSSGGSGSTGIGRTCSLSTRDHGLKRKGTEEEASEEQSEATELKSADGNKASQRTGSSRRNRAAEVHNLSERRRRDRINEKMRVLQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMWMGAGMTPVMFPGIQHYMSQMGMGMAAASLASIHNPMHDQSMSVPQIPNQTLMCQNPVLGAFNYQNQMQMQNPCLSEQYARYMGYHLMQSASQPMNASRYGSQAVQHSQTMIAPTNNSSGPMSGTANIDDVVSGRTSSSTFN 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3348 545 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 410 IPR036638 GO:0046983
Ssu6g3348 545 MobiDBLite consensus disorder prediction 279 301 - -
Ssu6g3348 545 MobiDBLite consensus disorder prediction 132 175 - -
Ssu6g3348 545 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 521 IPR031066 -
Ssu6g3348 545 PANTHER TRANSCRIPTION FACTOR PIF5 1 521 - -
Ssu6g3348 545 Coils Coil 311 331 - -
Ssu6g3348 545 MobiDBLite consensus disorder prediction 133 155 - -
Ssu6g3348 545 SMART finulus 353 402 IPR011598 GO:0046983
Ssu6g3348 545 MobiDBLite consensus disorder prediction 223 242 - -
Ssu6g3348 545 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983
Ssu6g3348 545 MobiDBLite consensus disorder prediction 43 82 - -
Ssu6g3348 545 MobiDBLite consensus disorder prediction 249 360 - -
Ssu6g3348 545 MobiDBLite consensus disorder prediction 515 545 - -
Ssu6g3348 545 MobiDBLite consensus disorder prediction 329 344 - -
Ssu6g3348 545 MobiDBLite consensus disorder prediction 304 328 - -
Ssu6g3348 545 MobiDBLite consensus disorder prediction 264 278 - -
Ssu6g3348 545 MobiDBLite consensus disorder prediction 345 360 - -
Ssu6g3348 545 Pfam Helix-loop-helix DNA-binding domain 351 397 IPR011598 GO:0046983
Ssu6g3348 545 Gene3D - 342 403 IPR036638 GO:0046983
Ssu6g3348 545 CDD bHLH_AtPIF_like 347 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3348 Ssu-Chr6 75657964 75661285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3348 7 523 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 34.211 2.77e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g3348 HLH 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3348 K16189 - gmx:100811777 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3348 6 75657964 75661285 Ssu6g3348 6 75657964 75661285 ECH
Ssu9g0811 9 35391761 35399612 Ssu6g3348 6 75657964 75661285 PCT
Ssu9g0771 9 34058022 34062455 Ssu6g3348 6 75657964 75661285 PCT