Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3341 ATGAAGAGCTGTCAGCCCAAAAGACATCTTCTTACTACAGGGTGGAGTGTCTTTGTCAGTGCCAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTCATCTGgaatgaaaaaaatcaattactCTTGGGCATACGGCGAGCGAATCGTCCGCAGACTATCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCATATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCCACAAATAGCCGCTTTACTATATTCTATAATCCTAGggCAAGCCCATCTGAATTTGTCATTCCTTTGGCCAAGTATGTTAAAGCTGTGTATCATACACGAGTTTCTGTTGGCATGCGATTTAGGATGCTCTTTGAGACAGAAGAATCAAGTGTTCGTCGATACATGGGTACCATAACTGGTATTAGTGATTTAGAACCGGTCCGCTGGTCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGAGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCTTTGACAACATTCCCGATGTATCCGTCTCCATTCCCCTTAAGGTTGAGACGCCCTTGGCCATCGGGCCTACCTTCTTTATATGGTCTCAAGGATGGAGACATGGGCATTGGTTCTCCATTCATGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCATTAAACTTCCAGGGGCTTGGTGTTACACCGTGGATGCAACCTAGACTTGATGCTTCTATACCAGGTCTCCAACCAGAGTTATACCAAGCAATGACTTCTTCTGCATTCCAGGAAATGAGGACAATGGATCCTTCAAAATCTTCCCAATCTCTGTTGCAGTTTCAGCAGACTTCAAATGTTCCCAGCACTCATACTTCTGAGGTACAGAGGCAAGTATTACCAGAGTCTCAGCCTCCAAACACCCTTCTACACAATTTTCAAGAAAACCAAGTGCCTTCTCAGTTACAACTTCTGCAACAGCCGTTGCATCGTTACCACCCATATAGTGATCAGCGGCAACAGCAGCAGCAACTTAAAAACTTGCCTGTTCAGCAGCATTTACCAAATGTCATCTCTCCTTTGTCTAATTTTGCATCAGGTACCCGGTCTCAATCTCCTCCGATGCAAGCCCTAGCTTCACATTGCCAGCAGCAAAGCTTTCCTGAACCTATCAGGAATCATATTTCTGGCTCTGATGTTTCCCCTATCCAGTGTCTACTAGGTTCATTCTCCCAGGATGGTACGTCCCAGTTACTTAACTTGAATGGATCCAATTCCGTTATATCTTCTGCAACCATACTACCCAAGCAAGTAACCGTTGAACCTCAGCTTCCATCTGCTGCTGCTCAGTGTGTATTGCCTCAGGTGGAAAACTTGGGAACATCACAATCAAATGTGTCTGAACTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAACATTCTGCATATCATGGTGCTACTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGACCCCTCTTCTCTTATGCTGCAAAATGGCATGTCAAACCTGAGAAATATAGGCAATGTGAATGATTCATTATCATTGCCATTTTCTGCTTCAAATTGTGGTGGCGCTACGGGTACTGGTTTCCCCTTAAGTTCAAACATGACAACTTCGAGTTGTGTGGATGAATCAGGCTTCTTGCAGTCTTCTGAAAATGTAGACCAAGCAAATACTCCTACTGGAACCTTTGTTAAGGTTCACAAGTCAGGGTCCTTTGGAAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGCAGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCAGGAGAATGATGTCCTTCTTCTTGGTGACGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGCACATAAAAATACTATCTCCACTAGAAGTGCAACAAATGGGCAAAGGTCTTAGTCCTTCTACTTCTGCCCCAGGTCACAAACTTTCTACTGCTGGCAACTCTTGTGATAATTATGTAAGTCAACAAGAGTTGAGAAGTTCGAGAAATGGCATGGCATCCATGGGGTCTTTTCACTACTAG 2139 0.4493 MKSCQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLEPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPSGLPSLYGLKDGDMGIGSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPRLDASIPGLQPELYQAMTSSAFQEMRTMDPSKSSQSLLQFQQTSNVPSTHTSEVQRQVLPESQPPNTLLHNFQENQVPSQLQLLQQPLHRYHPYSDQRQQQQQLKNLPVQQHLPNVISPLSNFASGTRSQSPPMQALASHCQQQSFPEPIRNHISGSDVSPIQCLLGSFSQDGTSQLLNLNGSNSVISSATILPKQVTVEPQLPSAAAQCVLPQVENLGTSQSNVSELAALPPFPGREHSAYHGATDPQSNLLFGINIDPSSLMLQNGMSNLRNIGNVNDSLSLPFSASNCGGATGTGFPLSSNMTTSSCVDESGFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDQENDVLLLGDDPWQEFVNNVWHIKILSPLEVQQMGKGLSPSTSAPGHKLSTAGNSCDNYVSQQELRSSRNGMASMGSFHY 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3341 712 PANTHER AUXIN RESPONSE FACTOR 6 5 689 - -
Ssu6g3341 712 MobiDBLite consensus disorder prediction 667 687 - -
Ssu6g3341 712 SUPERFAMILY DNA-binding pseudobarrel domain 5 75 IPR015300 -
Ssu6g3341 712 MobiDBLite consensus disorder prediction 270 301 - -
Ssu6g3341 712 Pfam AUX/IAA family 565 660 IPR033389 -
Ssu6g3341 712 SUPERFAMILY CAD & PB1 domains 569 652 - -
Ssu6g3341 712 Gene3D - 2 47 IPR015300 -
Ssu6g3341 712 Pfam Auxin response factor 72 155 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu6g3341 712 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 689 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu6g3341 712 MobiDBLite consensus disorder prediction 363 389 - -
Ssu6g3341 712 Gene3D - 572 667 - -
Ssu6g3341 712 Gene3D - 110 182 - -
Ssu6g3341 712 CDD B3_DNA 2 46 IPR003340 GO:0003677
Ssu6g3341 712 ProSiteProfiles B3 DNA-binding domain profile. 1 48 IPR003340 GO:0003677
Ssu6g3341 712 Pfam B3 DNA binding domain 6 47 IPR003340 GO:0003677
Ssu6g3341 712 ProSiteProfiles PB1 domain profile. 576 663 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3341 Ssu-Chr6 75507289 75514200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3341 5 667 B3 DNA Binding Superfamily AT5G37020 49.926 1.68e-175 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu6g3341 AUX_IAA 2.5e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3341 - - gmx:100810798 1305.04