Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3336 ATGTCCATTTTCTGTTGTCATAAAACCCTAAACCCCGAATTGCACTGTGTAGGGtttccatttccattttctCACCAAACCACACCACACCACACCATGCTAACCGTAATCCTCAGAAGAAGTTGCTCCACCGTGTCGAGGCGCGTTTTCCCCGCCGCCTTAATCGCCGCCTCCACCGCCGCCGGCGACGAGTTCCGGCCACTGTACGCCGCCTTCAATTCGAGAACCTTCCACTCGAAACCGGGGCCGTTGAATTTCCGGTCCTCTTTATGCCACCGTGCGGAATACGCCGTAGACGATTTCCCTTTCGAAGAAGGGTCCAAAGGAAACGCCGACGAAGGCCTCGAGATCGCGAAGCTCGGCATTTCTCAGGATATTGTCTCTGCTTTGGCCAAGAAAGGCATCACCAGACTCTTCCCCATTCAGAGGGCGGTGCTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAAACCCTTGCTTTTGGGATACCCATCATGGATAAGATCATTCAGTTCAATGCTAAGCATGGTCGGGGGAGGGATCCTTTGGCGTTGGTCTTGGCTCCGACTAGAGAGCTTGCGCGCCAGGTTGAAAAGGAGTTCTATGAGTCGGCGCCGAACTTGGATACGATTTGTGTTTATGGTGGTACACCCATCTCCCGGCAGATGAAGCAGCTTGATTATGGTGTTGATATTGCAGTGGGCACGCCTGGTCGGATTATTGACCTTCTCAACAGAGGTGCTCTAAATTTGAAGGATGTTCAATTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTGGGCTTTCAGGAAGATGTGGAGAAGATCTTGGAGAGGTTGCCCCCAAATCGTCAGACTCTTATGTTCTCTGCAACAATGCCATCTTGGATAAAGCAGATTTCGCGCAATTACCTGAATGATCCCCTGACCATTGATCTTGTTGGAGATTCTGAGCAGAAGTTGGCAGATGGAATTTCACTGTATTCCATTGCAACTGATCTGTATGTTAAAGGGGGAATTCTTGCACCTCTAATAGCAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACAAAGCGTGATGCTGATCGATTATCGTATACCATGGCAAGAAGTGTTCAATGTGAGGCTTTGCATGGAGACATATCACAAGCTCAGAGGGAAAAAACTCTTGCTGGCTTCAGAAATGGCCATTTTAATGTTTTAGTGGCAACTGATGTTGCCTCACGTGGGCTTGATATACCTAATGTTGATCTTGTGAGTTCTGTCttactgttttttatattttcgaAATAG 1329 0.4688 MSIFCCHKTLNPELHCVGFPFPFSHQTTPHHTMLTVILRRSCSTVSRRVFPAALIAASTAAGDEFRPLYAAFNSRTFHSKPGPLNFRSSLCHRAEYAVDDFPFEEGSKGNADEGLEIAKLGISQDIVSALAKKGITRLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELARQVEKEFYESAPNLDTICVYGGTPISRQMKQLDYGVDIAVGTPGRIIDLLNRGALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPNRQTLMFSATMPSWIKQISRNYLNDPLTIDLVGDSEQKLADGISLYSIATDLYVKGGILAPLIAEHAKGGKCIVFTQTKRDADRLSYTMARSVQCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVSSVLLFFIFSK 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3336 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 431 IPR027417 -
Ssu6g3336 442 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 442 IPR001650 -
Ssu6g3336 442 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 66 431 - -
Ssu6g3336 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 320 IPR027417 -
Ssu6g3336 442 Pfam DEAD/DEAH box helicase 139 308 IPR011545 GO:0003676|GO:0005524
Ssu6g3336 442 Gene3D - 346 434 IPR027417 -
Ssu6g3336 442 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 66 431 - -
Ssu6g3336 442 CDD SF2_C_DEAD 350 431 - -
Ssu6g3336 442 Pfam Helicase conserved C-terminal domain 353 431 IPR001650 -
Ssu6g3336 442 Gene3D - 116 324 IPR027417 -
Ssu6g3336 442 SMART helicmild6 374 438 IPR001650 -
Ssu6g3336 442 SMART ultradead3 134 337 IPR014001 -
Ssu6g3336 442 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 320 IPR014001 -
Ssu6g3336 442 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 115 143 IPR014014 GO:0003724
Ssu6g3336 442 CDD DEADc 126 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3336 Ssu-Chr6 75438384 75440664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3336 120 431 Eukaryotic Initiation Factors Gene Family AT3G19760 31.962 5.17e-50 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3336 - - gmx:100778436 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0761 9 33499266 33505569 Ssu6g3336 6 75438384 75440664 PCT