Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3335 ATGGGAACTCCAACTCTTAGCCTTGTACTTGTACTCCTTCTTTTGTGCTTAGCTTGGCCTGCTTCTGTTTCTTCCCTTCCCATGTCTCTTAGAAGGCAAGCCTCTATCCTGGTTTCCCTCAAACAAGATTTTGAGGCCAACACTGATTCTTTGAGCAGCTGGGACATGTCTAACCACATGTCCCTTTGCACTTGGGAGGGCATTCAGTGTGACCAAAAGAACAGGTCAGTGGTGTCATTGGACATATCCAACCTCAACCTTTCTGGCACACTTTCACCTGTCATCACAGGACTCAGGAGCCTTGTGAGTGTTTCAGTTGCTGGGAATGGCTTTTCAGGAGGTTTCCCTAGTAATATTCACAAGCTAGAATGGCTGAGATTCCTCAACATATCCAGCAACAAGTTCAGTGGAGACATGAGTTGGGAATTCTCTCAGTTGAAAGAGCTTGAAGTTCTGGATGCTTATGACAATGAATTCAATTGTTCCCTCCCTCTTGGTGTCACTCAGCTCCCCAAGCTCAAGTGCTTGAATTTTGGCGGGAATTATTTCTATGGTGAAATCCCTCCAAGCTATGGAGACATGGTGCAGCTCAACTTTCTGTCTCTTGCAGGGAATGATTTGAGGGGTCTCATACCAACTGAGCTTGGAAATCTCACTAACCTGACACAGCTTTTCTTGGGATACTACAATCAGTTTGATGGTGGAATCCCTCCTCAGTTTGGTAAGCTGGTTAATTTAGCTCATCTTGACCTTGCAAACTGTGGCTTGACAGGTCCAATTCCAGCTGAGTTGGGAAACCTCAACAAACTAGACACACTCTTTTTGCAAACTAACCAGCTCGGTGGTTCAATCCCTCCCCAACTAGGCAACATGAGTAGCTTGAAGTGTCTTGATCTATCAAACAATGAGCTAACAGGAGACGTCCCAAATGAGTTCTCAGGCCTTCATGAGCTCACCCTCTTGAACTTGTTCATCAACAGGTTGCATGGTGAAATTCCACCTTTCATTGCTGAGCTACCTAACTTGGAAGTGCTGAAGCTTTGGCAGAACAACTTCACAGGTGCCATTCCCTCAAAGCTTGGCCAGAATGGTAAATTGGCTGAGCTTGACCTGTCAACAAACAAGCTCACCGGATTGGTGCCTAAATCTCTATGCCTTGGAAGGAGGCTGAGGATTTTGATCCTGCTCAACAATTTTCTGTTTGGATCTTTGCCTGCTGATCTTGGCCAATGCTACACACTCCAAAGAGTTCGTTTGGGACAGAACTATTTGACAGGATCAATACCAAATGGTTTTCTTTACTTGCCTGAGCTGTCTCTTTTGGAATTGCAGAACAATTACCTTAGTGGTTGGCTTCCACAAGAAACAAGCACTGCACCCTCTAAACTTGGACAGTTGAATCTATCAAACAATCGCTTATCCAGGTCTCTTCCAACCTCTATTGGAAACTTCCCCAACTTGCAAATTCTGCTTCTTCATGGAAATAGAATCTCAGGAGAAATCCCTCCAGATATAGGGAGGTTGAAAAATATACTCAAGTTGGATATGAGTGTCAACAACTTTTCAGGCAGCATTCCTCCTGAGATAGGTAACTGTTTGTTGCTTACCTATTTAGATTTGAGCCAAAACCAACTATCAGGCCCTATCCCAGTTCAGCTTTCTCAAATTCACATACTAAACTATCTCAATGTCTCATGGAACCACCTAAACCAAAGTCTTCCCAAGGAACTTGGGGCCATGAAGGGCTTGACTTCAGCAGATTTTTCTCACAATGACTTCTCTGGTTCAATACCAGAGGAGGGGCAATTCTCAGTGTTTAACTCTACATCCTTCATGGGAAATCCTCAGCTCTGTGGATATGAGTTGAATCCATGCAACCATTCTTCAAATGCAATATTGGAGTCTCAAGAAAGTGGCAGTGCAAGACCTGGAGTTCCTGGGAAGTATAAGCTTCTTTTTGCAGTGGCACTGTTGGCTTGCTCATTGGCATTTGCAACCTTGGCCTTTATAAAGAGCAGAAAGCACAGGAGGCACTCCAATTCATGGAAACTCACAGCATTTCAGAATCTGGAATATGGAAGCGAAGACATCATAGGGTGCATAAAGGAAAGCAATGTCATAGGAAGGGGGGGAGCTGGGGTTGTATACCATGGAACCATGCCAAATGGAGAGCAAGTAGCTGTGAAGAAGCTCTTGGGAATCAACAAAGGGTGTTCTCATGATAATGGCCTCTCTGCAGAAATAAGGACACTGGGGAGAATCAGGCACAGGTACATTGTGAGGTTGCTGGCATTTTGCTCAAATAGAGAGACCAATTTGCTTGTTTATGAGTACATGCCTAATGGAAGCTTGGGTGAGGTCTTGCATGGGAAAAGGGGAGAGTTTCTCAAGTGGGATACTAGGCTGAAAATAGCAACAGAAGCTGCAAAAGGACTTTGCTATTTGCACCATGATTGTTCCCCTCTGATTATCCACAGAGATGTGAAGTCAAACAACATATTATTGAACTCTGAATTTGAGGCTCATGTTGCTGATTTTGGACTTGCCAAGTTCTTGCAAGATACTGGGACATCAGAGTGCATGTCTTCCATTGCTGGCTCCTATGGCTACATAGCTCCAgAATATGCATACACATTAAAAGTTGACGAGAAAAGTGATGTCTATAGCTTTGGAGTGGTGCTGCTAGAACTATTAACGGGGAGAAGGCCAGTGGGGAATTTTGGGGAAGAAGGACTGGACATTGTTCAATGGACCAAGTTACAAACAAATTGGAGCAAAGACAAAGTGGTGAAGATTCTTGATGAGAGGCTATGTCACATTCCCGTAGATGAAGCAAAGCAGGTATACTTTGTGGCCATGCTATGTGTTCAGGAGCAAAGTGTGGAGCGACCAACTATGAGGGAAGTAGTTGAAATGCTTGCACAAGCAAAGCAaccatatatatttcaaaagcaGTGA 2958 0.4391 MGTPTLSLVLVLLLLCLAWPASVSSLPMSLRRQASILVSLKQDFEANTDSLSSWDMSNHMSLCTWEGIQCDQKNRSVVSLDISNLNLSGTLSPVITGLRSLVSVSVAGNGFSGGFPSNIHKLEWLRFLNISSNKFSGDMSWEFSQLKELEVLDAYDNEFNCSLPLGVTQLPKLKCLNFGGNYFYGEIPPSYGDMVQLNFLSLAGNDLRGLIPTELGNLTNLTQLFLGYYNQFDGGIPPQFGKLVNLAHLDLANCGLTGPIPAELGNLNKLDTLFLQTNQLGGSIPPQLGNMSSLKCLDLSNNELTGDVPNEFSGLHELTLLNLFINRLHGEIPPFIAELPNLEVLKLWQNNFTGAIPSKLGQNGKLAELDLSTNKLTGLVPKSLCLGRRLRILILLNNFLFGSLPADLGQCYTLQRVRLGQNYLTGSIPNGFLYLPELSLLELQNNYLSGWLPQETSTAPSKLGQLNLSNNRLSRSLPTSIGNFPNLQILLLHGNRISGEIPPDIGRLKNILKLDMSVNNFSGSIPPEIGNCLLLTYLDLSQNQLSGPIPVQLSQIHILNYLNVSWNHLNQSLPKELGAMKGLTSADFSHNDFSGSIPEEGQFSVFNSTSFMGNPQLCGYELNPCNHSSNAILESQESGSARPGVPGKYKLLFAVALLACSLAFATLAFIKSRKHRRHSNSWKLTAFQNLEYGSEDIIGCIKESNVIGRGGAGVVYHGTMPNGEQVAVKKLLGINKGCSHDNGLSAEIRTLGRIRHRYIVRLLAFCSNRETNLLVYEYMPNGSLGEVLHGKRGEFLKWDTRLKIATEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFLQDTGTSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRRPVGNFGEEGLDIVQWTKLQTNWSKDKVVKILDERLCHIPVDEAKQVYFVAMLCVQEQSVERPTMREVVEMLAQAKQPYIFQKQ 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3335 985 Pfam Protein tyrosine and serine/threonine kinase 703 973 IPR001245 GO:0004672|GO:0006468
Ssu6g3335 985 Gene3D Ribonuclease Inhibitor 286 363 IPR032675 -
Ssu6g3335 985 ProSiteProfiles Protein kinase domain profile. 701 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3335 985 Gene3D Transferase(Phosphotransferase) domain 1 779 983 - -
Ssu6g3335 985 Gene3D Ribonuclease Inhibitor 364 632 IPR032675 -
Ssu6g3335 985 Gene3D Phosphorylase Kinase; domain 1 670 778 - -
Ssu6g3335 985 SUPERFAMILY Protein kinase-like (PK-like) 695 973 IPR011009 -
Ssu6g3335 985 Gene3D Ribonuclease Inhibitor 180 285 IPR032675 -
Ssu6g3335 985 SMART serkin_6 701 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3335 985 Pfam Leucine rich repeat 289 328 IPR001611 GO:0005515
Ssu6g3335 985 Gene3D Ribonuclease Inhibitor 29 179 IPR032675 -
Ssu6g3335 985 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Ssu6g3335 985 SMART LRR_typ_2 484 508 IPR003591 -
Ssu6g3335 985 SMART LRR_typ_2 194 217 IPR003591 -
Ssu6g3335 985 SMART LRR_typ_2 435 459 IPR003591 -
Ssu6g3335 985 SMART LRR_typ_2 243 267 IPR003591 -
Ssu6g3335 985 SMART LRR_typ_2 291 314 IPR003591 -
Ssu6g3335 985 SMART LRR_typ_2 364 386 IPR003591 -
Ssu6g3335 985 SMART LRR_typ_2 556 580 IPR003591 -
Ssu6g3335 985 SMART LRR_typ_2 339 363 IPR003591 -
Ssu6g3335 985 SUPERFAMILY L domain-like 308 627 - -
Ssu6g3335 985 PANTHER UNNAMED PRODUCT 8 979 - -
Ssu6g3335 985 SUPERFAMILY L domain-like 59 381 - -
Ssu6g3335 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Ssu6g3335 985 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 8 979 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3335 Ssu-Chr6 75420859 75424794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3335 23 975 Receptor kinase-like Gene Family AT5G65700 58.098 0.0 1096
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu6g3335 PK_Tyr_Ser-Thr 6.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3335 - - gmx:100816158 1832.77