Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3333 ATGGCTTTCTTTAGGAACTTTTCAAATGATACAGTCTCACATGGTGTCATGGAAGATAAAAGCCAAGGACAGAATGCTAATAGAGTTCATAGATCAGTAGGTAATGAATGTAATGATGCAACTTCTAGTGAGAAAGAATTTGATATGAACATGGAGGCACAGTATGAGAGTGATGGCGAACCAGATGGTTCCAGTAGACTGCAAACTGAGGCAACAGCCGATGATGGAGATGCTGTGAAAGAATCAAACTTGCAGACTACTGGTAGTAAAACAGCTATGATGGGAAGGTGGGGTTCAACATTTTGGAAGGACTGTGGGCAAATGGGCCCTCAAAATGGTTCTGAATCTGGGCAGGAATCAAAAAGTGGATCAGAATATAGAAATGCAGATGGGTCTGAAGATAATTCATTGGATGGAAGAGCAGGAAGATTAGACtcagatgatgatgatggacaAAAGGAGGCAGGCAAAGGTCCAAGAGGTCACTCTGATGTTCCTGCTGAAGAGATGTTGTCTGATGAGTATTATGAGCAGGATGGGGAAGAGCAGAGTGACTCATTGCATTACCGTGGGATCAAAAAGCCCACTGGATCAAATTCATGGCCTCAACGGACGTCGACTACTGTGAATAGAACTTTGCATAGGAATTCAAGGTTTTCAGATGATGCTGAAGATAATGATggtgaagatgatgatgatgatggtgataataataatgatggtgatgatgctGATTATGAAGAAGAGGACGAAGCAGATGAAGATGATCCCGATGATGCAGACTTTGAGCCTGCCACAAGTGGTCATGCTGGAAACAAGGATAAAAATTGGGAAGGGGAAGGCtcagatgatgatgatgatgatagtgaCGAAAATATAGTTGTCtcagatgatgatgatgaatctTTCTATGCTAAAAGACCTAAAGGAAGGCAACGAGGTAAGGTTGGACAAAACACAAAATCTACCAGAGATCGCAAAGTGTATGCTGCATCTGGTCGACAAAGAAGAGTCAAATCATCTTTTGAGGATAATGAGTCAACAACGGAGGATTCTGACAGTGATAGTGATGAGGATTTCAAAAGCACAAAAAAGCGGAGTGTTCATGTCCGCAAGAATAATGGTCGCTCTTCTGCAGCCTCAGGTTTTTCTACACGCAACAGTGAGGTTCGCACTTCTAGTAGGACAGTTAGGAAGGTATCATATGTTGAAAGTGAAGAAAGTGAAGAAGCTGatgaagggaaaaagaaaaagtcccaAAAGGAAGAAATTGAAGAGGACGATGGTGACTCCATTGAGAAGGTGCTCTGGCATCAGCCAAAAGGCACTGCTGAAGATGCTCAAAGGAATAATAGATCGACAGAGCCTGTTTTAATGAGTCACTTGTTTTATTCGGAATTTGATTGGAATGAGATggaatttttgataaaatggaAAGGGCAGTCACATTTGCACTGTCAGTGGAAGTCTTTTGCCGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTGAattatacaaagaaaataatggaggaCATCAGGTACAGGAGGACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATCAAACAGAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATCAGCAAAGATAATTCTGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGCGACTTGGGAAAAGGACATTGATATTGCTTTTGCTCAACATGCCATTGATGAGTATAAGGCTCGTGAGGCTGCTATGTCAGTTCAAGGAAAGATGGTAGATTCTCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTAGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTATCGATGCTTGGATTTCTACAGAATGCCCAGCAAATCCACGGTCCTTTTCTTGTAGTTGTTCCATTGTCCACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATAtgaatattatcatatatgttgGTACTCGTGCAAGTCGAGAGGTTTGTCaacaatatgaattttataatgataaaagGCCTGGAAAGCCAATAAAATTCAATGCACTGTTGACTACATATGAAGTAGTTTTGAAGGATAAGGCTGTTCTCTCCAAGATCAAATGGAATTATGTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAGTTGTATACAACACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCTCTACAGAACAGTGTGGAAGAATTATGGGCTTTGCTTCATTTCCTTGATCCTGACAAGTTCAGGAGCAAGGATGAATTTGTTCAAAACTATAAGAATCTGAGTTCTTTCAATGAGAATGAGcTTGCAAATCTTCATATGGAATTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTAGAGAAATCATTACCCCCCAAAATTGAGCGTATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAATTTTCACAATTTGAACAAAGGTGTTCGTGGGAATCAGGTTTCTCTTCTGAATATTGTGGTGGAATTAAAGAAGTGCTGCAACCATCCCTTCTTGTTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCAGGAAGCAGTGACAACAGTAAACTAGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTCATACTTGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTGGATATACTGGGAGAGTATATGTCACTTCGAGGGTTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGCGCCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACGCGGGCAGGAGGTCTGGGTATCAACCTTGCCACAGCAGACACTGTCATAATATTTGATTCTGATTGGAATCCTCAAAATGATCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTAAGAAGAAGATGGTTCTGGACCACTTGGTGATTCAAAAACTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAAATGAGCTGTCCGCAATCTTACGATTTGGAGCAGAGGAGCTTTTTaaggaagaaagaaatgatgaaGAAAGCAAGAAACGACTCTTAAGTATGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCGAGTGGGGAACAAGGAAATGAGTTATTAAGTGCCTTTAAGGTTGCCAATTTTTGCAATGAAGATGATGGAAGTTTCTGGAGCCGTTGGATAAAGCCTGATGCTGTATTCCAAGCAGAGgaAGCTCTTGCTCCTCGATCTGCtagaaatattaaaagctatGCAGAGGTTGATCCATCTGAAAgaagtaataaaagaaaaaagaaggaaactgAACCACCTGAACGAGTTCAGAAACGCCGGAAAGCAGAATATTCTGCTCCTGCCGTACCAATGATTGAGGGAGCATCTGTCCAAGTGAGAAATTGGTCATATGGGAATTTATCTAAACGAGATGCACTCCGTTTTTCTCGTTCAGTTATGAAATATGGGAATGAGAGCCAAATTGACTTAATTGTTGCTGAGTTTGGTGGTGCTGTTGGGGCAGCTCCACCTGGAGCACAGATTGAACTTTTCAATACTCTAATTGATGGCTGTACAGAAGCAGTGGAACTTGGAAATCTAGATGTAAAGGGGCCTTTGCTGGATTTTTTTGGTGTCCCAGTGAAGGCAAATGATCTACTTACCCGTGTCCAACAACTTCAACTTCTGGCAAAGCGCATTGGTCGATATGAGGATCCTATTGCGCAATTTCGTGTTCTGTCATATCTCAAACCATCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCTAGATTGCTTCTTGGAATACATTACCATGGGTTTGGTAATTGGGAAAAGATTAGATTAGATGAAAGACTTGGCCTTACGAAAAAAATTGCACCTGTAGAACTTCAACACCATGAAACTTTCTTGCCACGAGCCCCAAATTTGAAAGACCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCGGTTCTTGGTGGGACAAATGCCAATAGCAGAGTTGGACGGAAGCCTAccaagaaagagagagaaaatatgatCAACATCTCACTGCGTGGgcaggagaaaaagaaaaaatcaggTACTGTTAATGTCCAAATGAGAAAGGATAGATTTCAGAAACCCCAGAAGGTTGAATCTATAGTAAAGGAAGAGGGTGAAATGTCTGACAATGAGGAAGTATATGAGCAGTTCAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCATAGGTTGCAGCAAACTAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCAAAAATACGCAACTATTTACAACTTCTTGGGCGAAGGATAGATCAAATTGTGTTAGACCATGAAGAGGAACCCTATAAGCAAGATAGAATGACTGTGCGACTGTGGAAATATGTCTCCACTTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTCGACAGGAGCAAGATGAGGCGGGGGGTGGCCCCTCTCATGTCAATGGGTCGGTCTCTGTTTCATATAGCAGAAACGGAAACCCATTCCGTCGCCACATGGAGAGGCAAAgaggattaaaaaatatgactaCCTATCAAATGCCAGAAGCAGTTAATAATACTGGGAAATCAGAGGCATGGAAACGAAGAAGAAGAGATGAAAGTGATAATCATTTCCAGGGTCAGCTGCCACCTCAAAGAACCATAAGTAATGGAATCCGGATTACGGATCCTAACTCACTCGGGATCCTAGGTGCTGGACCATCGGACAAACGCTTTGCTAGTGAGAAACCTTACAGGACACAACCTGGTGGGTTTCCTTCAAGACAAGGCTTCTCTTCAGCTTCAGCTATTGTACATTCTGTggaatttttttcttccaccCATGGGAATAAGATCTTGCGGATCCCTTTTTGGTGTCTTGTGGCGGATATGAGAAATATCCCTACACTGGGATTCACATCCTTGACCAAGATGGCTGAAGCCGAAAAGATCTAA 5442 0.3907 MAFFRNFSNDTVSHGVMEDKSQGQNANRVHRSVGNECNDATSSEKEFDMNMEAQYESDGEPDGSSRLQTEATADDGDAVKESNLQTTGSKTAMMGRWGSTFWKDCGQMGPQNGSESGQESKSGSEYRNADGSEDNSLDGRAGRLDSDDDDGQKEAGKGPRGHSDVPAEEMLSDEYYEQDGEEQSDSLHYRGIKKPTGSNSWPQRTSTTVNRTLHRNSRFSDDAEDNDGEDDDDDGDNNNDGDDADYEEEDEADEDDPDDADFEPATSGHAGNKDKNWEGEGSDDDDDDSDENIVVSDDDDESFYAKRPKGRQRGKVGQNTKSTRDRKVYAASGRQRRVKSSFEDNESTTEDSDSDSDEDFKSTKKRSVHVRKNNGRSSAASGFSTRNSEVRTSSRTVRKVSYVESEESEEADEGKKKKSQKEEIEEDDGDSIEKVLWHQPKGTAEDAQRNNRSTEPVLMSHLFYSEFDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRRTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIPEYLVKWQGLSYAEATWEKDIDIAFAQHAIDEYKAREAAMSVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNDKRPGKPIKFNALLTTYEVVLKDKAVLSKIKWNYVMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEASGEQGNELLSAFKVANFCNEDDGSFWSRWIKPDAVFQAEEALAPRSARNIKSYAEVDPSERSNKRKKKETEPPERVQKRRKAEYSAPAVPMIEGASVQVRNWSYGNLSKRDALRFSRSVMKYGNESQIDLIVAEFGGAVGAAPPGAQIELFNTLIDGCTEAVELGNLDVKGPLLDFFGVPVKANDLLTRVQQLQLLAKRIGRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGGTNANSRVGRKPTKKERENMINISLRGQEKKKKSGTVNVQMRKDRFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQQTSANLPKEKVLSKIRNYLQLLGRRIDQIVLDHEEEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQDEAGGGPSHVNGSVSVSYSRNGNPFRRHMERQRGLKNMTTYQMPEAVNNTGKSEAWKRRRRDESDNHFQGQLPPQRTISNGIRITDPNSLGILGAGPSDKRFASEKPYRTQPGGFPSRQGFSSASAIVHSVEFFSSTHGNKILRIPFWCLVADMRNIPTLGFTSLTKMAEAEKI 1813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3333 1813 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 112 1682 - -
Ssu6g3333 1813 Pfam Chromo (CHRromatin Organisation MOdifier) domain 544 598 IPR023780 -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 280 298 - -
Ssu6g3333 1813 Gene3D - 626 865 IPR038718 -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 1224 1254 - -
Ssu6g3333 1813 ProSiteProfiles Chromo and chromo shadow domain profile. 543 607 IPR000953 -
Ssu6g3333 1813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 856 IPR027417 -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 1225 1253 - -
Ssu6g3333 1813 CDD CD1_tandem 428 508 - -
Ssu6g3333 1813 Pfam SNF2-related domain 654 923 IPR000330 GO:0005524|GO:0140658
Ssu6g3333 1813 Pfam Helicase conserved C-terminal domain 952 1065 IPR001650 -
Ssu6g3333 1813 Coils Coil 1149 1169 - -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 105 125 - -
Ssu6g3333 1813 SMART helicmild6 981 1065 IPR001650 -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 400 433 - -
Ssu6g3333 1813 Gene3D - 1361 1468 - -
Ssu6g3333 1813 Gene3D - 545 597 - -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 79 94 - -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 1687 1722 - -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 1 40 - -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 196 214 - -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 1691 1706 - -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 1707 1722 - -
Ssu6g3333 1813 Coils Coil 1095 1115 - -
Ssu6g3333 1813 CDD SF2_C_SNF 941 1076 - -
Ssu6g3333 1813 Pfam Domain of unknown function (DUF4208) 1542 1634 IPR025260 -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 373 399 - -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 318 346 - -
Ssu6g3333 1813 ProSiteProfiles Chromo and chromo shadow domain profile. 430 518 IPR000953 -
Ssu6g3333 1813 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 112 1682 - -
Ssu6g3333 1813 SUPERFAMILY Chromo domain-like 427 510 IPR016197 -
Ssu6g3333 1813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 859 1141 IPR027417 -
Ssu6g3333 1813 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 955 1106 IPR001650 -
Ssu6g3333 1813 SUPERFAMILY Chromo domain-like 522 598 IPR016197 -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 126 169 - -
Ssu6g3333 1813 SMART ultradead3 631 831 IPR014001 -
Ssu6g3333 1813 Gene3D - 416 543 - -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 1636 1663 - -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 223 261 - -
Ssu6g3333 1813 CDD CD2_tandem 541 597 - -
Ssu6g3333 1813 SMART chromo_7 541 600 IPR000953 -
Ssu6g3333 1813 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 647 819 IPR014001 -
Ssu6g3333 1813 MobiDBLite consensus disorder prediction 1 433 - -
Ssu6g3333 1813 SMART DUF4208_2 1530 1635 IPR025260 -
Ssu6g3333 1813 Gene3D - 866 1096 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3333 Ssu-Chr6 75367994 75388386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3333 657 1092 RAD5 or RAD16-like Gene Family AT1G02670 25.992 2.84e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu6g3333 SNF2_N 5.3e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3333 K11367 - gmx:100808039 3169.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3333 6 75367994 75388386 Ssu6g3333 6 75367994 75388386 ECH