Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3327 atgttgTCTCCAGATGATGATAAAGGGCAAATGAACGCCAGTGAcCCTATCTTTCAAAGATATCCACGGCCTGAGAAAGAATACCAGTCATTTTCTCTTATCTACAATGATAGGTCACTGGACCTGATTTGCAAGGATAAAGATGAAGCTGAAGTTTGGTTTAGTGGTTTGAAAGCATTAATTTCTCGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTATTCCATCTGAGGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCACCCTTAAATTCTCCCTTTGGCAGTAATGAAAGCCTGCAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGCCCATATGAGAGTCCCCCTAAGAATGGTTTGGATAAAGCATTAGATGTGGTTTTATATGCTGTCCCTCAAAAGGGTTTCTTCCCTCCAGATTCTGCCAGTGCTTCCGTACATTCTGTGTCATCTGGAGGATCAGACAGTATGCATGGTCACATGAAGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCACATCTAGCCAAGGTTCTGGTCATGATGATGGTGATCCTCTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTCTGGGTGGTGGGAATCACCGAGCTGGGAGTTGTTTGGGTGTAAAAATGGATTCTCTATTTCCCAAAGCCTTGGAATCTGCAGTAGTTCTTGATGTACAAAATATTGCTTGCGGTGGACGACATGCAGCCTTAGTGACCAAACAAGGTGAAATTTTCTCCTGGGGGGAGGAATCAGGCGGCAGACTTGGGCACGGTGTTGACTCCGATGTTCTCCATCCAAAGCTTATAGAAGCTTTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAATATCATACGTGTGCCGTGACACTTTCTGGTGATCTTTATACATGGGGTAATGGCACATACAATTATGGCCTTCTAGGACATGGAAATCAAGTGAGCCACTGGGTACCAAAAAGAGTAAATGGCCCCTTGGAAGGCATACATGTTTCATATATTTCTTGTGGACCATGGCACACTGCTGTTGTAACATCTGCTGGTCAATTATTTACTTTTGGTGATGGTACATTTGGTGCTTTGGGTCATGGAGACCGGAAAAGTGTTTCATTACCGAGGGAAGTAGAGTCCCTCAAGGGTCTTCGTACTGTGCGGGCTGCATGTGGTGTTTGGCATACTGCTGCAGTCGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCGGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCACGGTGATAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCCCTCATTGAACCCAATTTTTGTCAAGTTGCTTGTGGACATAGTCTCACTGTTGCACTTACCACCTCTGGCCATGTCTATACAATGGGTAGTCCTGTCTATGGCCAGTTAGGAAATCCTCAAGCTGATGGGAAGCTACCAACCCGTGTTGAAGGGAAATTGTCAAAGAGCTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCGGTTTTAACTTCAAGGACTGAAGTTTACTCTTGGGGGAAGGGTGCAAATGGCCGTTTAGGCCATGGGGATACAGATGATAGAAATACCCCAACACTAGTAGAAGCTCTGAAAGACAAAGATGTTAAAAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATATGTCTGCATAAGTGGGTATCTGGTGTTGACCAGTCTATGTGTTCGGGTTGTCGTATGccatttaatttcaaaagaaaacgCCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGTAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGtgataattgttttaataaactTAGGAAAACTGTAGAAACTGATTCGTCATCTCATTCTTCTGTGAGCAGAAGAGGAAGTGTCAATCAAGGATCTCTGGAGTTGATTGATAAGGATGATAAATTGGATTCCAGATCTCGTAATCAACTTGCCAGATTTTCTTCAATGGAATCCTTGAAGCAAGTGGAAAGCAGATCttcaaagaaaaacaagaaattggAATTCAACAGCAGCCGTGTCTCGCCCGTTCCAAATGGGGGTTCACAATGGGGAGCATTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGatcatcaaagaaatttttctcAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCAATATCTAGACGGCCTAGTCCACCTCGTTCAACTACACCAACCCCAACACTGGGAGGTCTTACATCTCCAAAGATAGTTGTGGATGATGCTAAGAGGACTAACGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAGGCCCAACTTCAAGAAGTTGAGTTGGAAAGAACAACTAAACAGCTAAAAGATGCAATAGCAATTGCCGGGGAAGAAACTGCCAAATGTAAAGCAGCAAAGGAAGTAATAAAGTCACTTACTGCCCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCTGCCAGGAATGTCAAATCACCGTCTCTTGCTTCTTTTGGTTCCAATCCTTGTTCGAATGATGTTAGCTATGCTTCCACTGATCGATTAAATATTCAAGCAACAAGCCCAGAGGCAGATTTAACTGGATCAAACCACCAGTTACTTTCAAATGGATCAAGCACTGTCGGTAGCCGTAGTACCGGTCACAATAAACAGAGCCAGTCAGATTCAACTAATAGAAATGGGAGCAGAACTAAGGACAGTGAATCCCGTAATGAAACCGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACACTCACTTCCCTTCCAGGCGGTGTAATAGATCTTAAAAGAGTTCGGTTCAGTCGGAAGCGGTTCAGTGAGAAGCAAGCAGAGCAGTGGTGGGCTGAGAATCGTGCAAGAGTATATGAACAGTACAATGTGCGCATGATTGACAAGTCTTCTGTTGGTGTTGGGAGTGAAGACCTGGCTCATTGA 3120 0.4285 MLSPDDDKGQMNASDPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKGFFPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSTSSQGSGHDDGDPLGDVFIWGEGTGDGVLGGGNHRAGSCLGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGNGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVALIEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYSWGKGANGRLGHGDTDDRNTPTLVEALKDKDVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRMPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTVETDSSSHSSVSRRGSVNQGSLELIDKDDKLDSRSRNQLARFSSMESLKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNVKSPSLASFGSNPCSNDVSYASTDRLNIQATSPEADLTGSNHQLLSNGSSTVGSRSTGHNKQSQSDSTNRNGSRTKDSESRNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSSVGVGSEDLAH 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3327 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 600 661 IPR013083 -
Ssu6g3327 1039 Coils Coil 854 874 - -
Ssu6g3327 1039 SMART fyve_4 586 655 IPR000306 GO:0046872
Ssu6g3327 1039 MobiDBLite consensus disorder prediction 721 735 - -
Ssu6g3327 1039 MobiDBLite consensus disorder prediction 954 970 - -
Ssu6g3327 1039 Coils Coil 798 839 - -
Ssu6g3327 1039 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 433 483 IPR000408 -
Ssu6g3327 1039 MobiDBLite consensus disorder prediction 1 23 - -
Ssu6g3327 1039 Gene3D - 9 70 IPR011993 -
Ssu6g3327 1039 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 369 420 IPR000408 -
Ssu6g3327 1039 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 314 368 IPR000408 -
Ssu6g3327 1039 Pfam Regulator of chromosome condensation (RCC1) repeat 537 584 IPR000408 -
Ssu6g3327 1039 Pfam Regulator of chromosome condensation (RCC1) repeat 369 417 IPR000408 -
Ssu6g3327 1039 Pfam Regulator of chromosome condensation (RCC1) repeat 262 310 IPR000408 -
Ssu6g3327 1039 Pfam Regulator of chromosome condensation (RCC1) repeat 483 532 IPR000408 -
Ssu6g3327 1039 Pfam Regulator of chromosome condensation (RCC1) repeat 432 480 IPR000408 -
Ssu6g3327 1039 Pfam Regulator of chromosome condensation (RCC1) repeat 313 365 IPR000408 -
Ssu6g3327 1039 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 200 261 IPR000408 -
Ssu6g3327 1039 Gene3D - 324 498 IPR009091 -
Ssu6g3327 1039 Gene3D - 155 323 IPR009091 -
Ssu6g3327 1039 Gene3D - 499 599 IPR009091 -
Ssu6g3327 1039 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 15 1025 - -
Ssu6g3327 1039 MobiDBLite consensus disorder prediction 766 794 - -
Ssu6g3327 1039 Pfam FYVE zinc finger 588 654 IPR000306 GO:0046872
Ssu6g3327 1039 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 262 313 IPR000408 -
Ssu6g3327 1039 Pfam Unstructured region between BRX_N and BRX domain 890 959 - -
Ssu6g3327 1039 MobiDBLite consensus disorder prediction 915 970 - -
Ssu6g3327 1039 Pfam Transcription factor regulating root and shoot growth via Pin3 965 1020 IPR013591 -
Ssu6g3327 1039 ProSiteProfiles PH domain profile. 1 62 IPR001849 -
Ssu6g3327 1039 SUPERFAMILY FYVE/PHD zinc finger 588 659 IPR011011 -
Ssu6g3327 1039 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 484 535 IPR000408 -
Ssu6g3327 1039 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 407 417 IPR000408 -
Ssu6g3327 1039 MobiDBLite consensus disorder prediction 76 106 - -
Ssu6g3327 1039 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 592 654 IPR017455 -
Ssu6g3327 1039 MobiDBLite consensus disorder prediction 660 735 - -
Ssu6g3327 1039 ProSiteProfiles BRX domain profile. 966 1021 IPR013591 -
Ssu6g3327 1039 CDD FYVE_like_SF 597 650 - -
Ssu6g3327 1039 MobiDBLite consensus disorder prediction 65 124 - -
Ssu6g3327 1039 SUPERFAMILY PH domain-like 14 61 - -
Ssu6g3327 1039 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 355 365 IPR000408 -
Ssu6g3327 1039 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 536 587 IPR000408 -
Ssu6g3327 1039 MobiDBLite consensus disorder prediction 915 953 - -
Ssu6g3327 1039 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 248 258 IPR000408 -
Ssu6g3327 1039 PRINTS Chromosome condensation regulator RCC1 signature 264 280 IPR000408 -
Ssu6g3327 1039 PRINTS Chromosome condensation regulator RCC1 signature 245 258 IPR000408 -
Ssu6g3327 1039 PRINTS Chromosome condensation regulator RCC1 signature 473 491 IPR000408 -
Ssu6g3327 1039 PRINTS Chromosome condensation regulator RCC1 signature 314 330 IPR000408 -
Ssu6g3327 1039 PRINTS Chromosome condensation regulator RCC1 signature 371 385 IPR000408 -
Ssu6g3327 1039 PRINTS Chromosome condensation regulator RCC1 signature 355 371 IPR000408 -
Ssu6g3327 1039 PRINTS Chromosome condensation regulator RCC1 signature 531 552 IPR000408 -
Ssu6g3327 1039 SUPERFAMILY RCC1/BLIP-II 199 589 IPR009091 -
Ssu6g3327 1039 MobiDBLite consensus disorder prediction 660 675 - -
Ssu6g3327 1039 Pfam Transcription factor BRX N-terminal domain 849 882 IPR027988 -
Ssu6g3327 1039 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 15 1025 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3327 Ssu-Chr6 75314267 75327586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3327 858 1030 Major Intrinsic Protein MIP AT1G31880 33.690 1.18e-18 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3327 - - gmx:100806439 1903.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3327 6 75314267 75327586 Ssu6g3327 6 75314267 75327586 ECH
Ssu9g0747 9 32928237 32942095 Ssu6g3327 6 75314267 75327586 PCT