Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3326 ATGGAAGAATCAAGTGAATTGCAGTCAGAAGAAAATAAAGTCtccaatgagaaaaataagaaaagaaagctGAAAACACCTGCCCAGCTTATGGCCTTGGAGAAATTTTATAATGAGCACAAATATCCCACAGAGGAAATGAAATTAGAACTTGCTGAGGAGTTAGGATTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGGTTAAAGGATAAAAGATTGTTGAAAGATGAAGCTGTTGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGACTTGGGCAAGATTCATGTGGAAGCAGTAAACATGCTGATTATAGGTATCTAGATCCTAAGGAGGTTGAGAGCCATGGCCTCTACAATCATGAACTTTCAGTTGCAGATATGACCCATGGACGTGGGAACCATTATCCTGAAAATGTTAGCGGAGTGGATGACACATCATCTGAGAGCAGCTCATTTTTGCAAGAAAGGTTGTTTTCTCAAGGTCAGGATCCATATGATATGGAACCTTCTAGACATCTTACACCTAACGGAGCTCTTCCACCGCTAAATCCCAAAGGTGCGGTTAACATGGGATATAAACCATCAGGATATTTGAAAGTGAAAGGCGAGATAGAACATGCTGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGCATTATCAGGAAGATGGTCCACTACTTGGTGTAGAATTTGATCCACTTCCTCCAGGGGCATTTGAATGCCAAACTGCAGATCGAGCTAATGAACCATACTGTGTTGCAAATCCTCCGCTTCCGAATTCTCCAGAAATCTCTGCTGCAAAAAGACAACCCATTCTTAGCTCTGATAAACAAGATAAGAAAGCCCGCCAGaatataaaacaaaggcaaactTTCTACGGTTATACCAATCATTTTCCTGGAAGGAACTCTTTCCCGGATTTGTATGAAGACTCTACTGGAGAAGCATCTGCTTATAATAGCACTAAGAATCATAGAATGAGCATGAAGCATGGTGTTGAGGGGATGAGATCTGATTCTGCTTCTAACCATAGTGATCACTATGAAGAGAAGCTTGCCGTTAAGCAGAAAGACTTGATGCTGCATGGTTATGATAACATCAATCCAAAGAATATACAAAGGAGTGAACACGTAAAATCTAAACCTTCTAGTTCAATCCGTAATCCCTGTGTTCCTATGGATACTGAAGAAAGGGGGTTATCTGCTAGGATGGCAAAGGAAGAGATGTTTAAGGGGGACAGGAAAGCAAAAAATGCATACCGCGATGTAGATGGAGCAGGGATGCTTTCAAATGAAATCATGGTTGCAAAACGAGCTAAAGTTGACACGCTTCAACAATACAATGTGAAACAATCACCTGTTGCTGAGATGGAACAAAGGAAAATTCAGAGATCTGCTGCAGAGATGCCTTCTAGCTTTAGCGAGGATGAAACTGCTGAAACCAGTTCCTCACTGGATTATTAG 1494 0.4029 MEESSELQSEENKVSNEKNKKRKLKTPAQLMALEKFYNEHKYPTEEMKLELAEELGLTEKQISGWFCHRRLKDKRLLKDEAVANGRQDRSSGVIQDRGSGLGQDSCGSSKHADYRYLDPKEVESHGLYNHELSVADMTHGRGNHYPENVSGVDDTSSESSSFLQERLFSQGQDPYDMEPSRHLTPNGALPPLNPKGAVNMGYKPSGYLKVKGEIEHAAITAVKKQLGRHYQEDGPLLGVEFDPLPPGAFECQTADRANEPYCVANPPLPNSPEISAAKRQPILSSDKQDKKARQNIKQRQTFYGYTNHFPGRNSFPDLYEDSTGEASAYNSTKNHRMSMKHGVEGMRSDSASNHSDHYEEKLAVKQKDLMLHGYDNINPKNIQRSEHVKSKPSSSIRNPCVPMDTEERGLSARMAKEEMFKGDRKAKNAYRDVDGAGMLSNEIMVAKRAKVDTLQQYNVKQSPVAEMEQRKIQRSAAEMPSSFSEDETAETSSSLDY 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3326 497 MobiDBLite consensus disorder prediction 463 497 - -
Ssu6g3326 497 MobiDBLite consensus disorder prediction 82 109 - -
Ssu6g3326 497 MobiDBLite consensus disorder prediction 475 497 - -
Ssu6g3326 497 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 284 496 - -
Ssu6g3326 497 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Ssu6g3326 497 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 285 - -
Ssu6g3326 497 CDD homeodomain 20 75 IPR001356 GO:0003677
Ssu6g3326 497 MobiDBLite consensus disorder prediction 7 26 - -
Ssu6g3326 497 SMART HOX_1 18 80 IPR001356 GO:0003677
Ssu6g3326 497 MobiDBLite consensus disorder prediction 1 26 - -
Ssu6g3326 497 MobiDBLite consensus disorder prediction 88 106 - -
Ssu6g3326 497 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Ssu6g3326 497 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 284 496 - -
Ssu6g3326 497 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 285 - -
Ssu6g3326 497 SUPERFAMILY Homeodomain-like 18 83 IPR009057 -
Ssu6g3326 497 Gene3D - 12 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3326 Ssu-Chr6 75294276 75300054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3326 3 496 Homeobox Transcription Factor Family AT4G03250 42.379 3.40e-96 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Ssu6g3326 Homeodomain 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3326 - - gmx:100803515 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3326 6 75294276 75300054 Ssu6g3326 6 75294276 75300054 ECH
Ssu9g0745 9 32826390 32832477 Ssu6g3326 6 75294276 75300054 PCT