Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3323 ATGACTGCCACAGAGCGTAGTTGCATGCACGCGCCGTTCCGTGCGGGATTGAGACGGAAGTGGTGTAGGTATTCTGGGGTGAGAATTGCACAACGCGCGGAGAGTGTACCACACGCGCCGAGCCCACAAGTAATGAGTGGCGTCATCCCAATCTATCCATCTACTGTACACCCATTTCTATTAACGGTAGCgatattaaaacttaatattttgattGTTTCTGATTGGAGAAATCAAGCACTTTCAGTTGTGGCTACTACAAGGAGGTTACCTTCAGATTCTGGTGCCTTTGCTGACTGGGCAGCGTCAACCTCTTCCTCCGGCGGCCGCGCTGTCCCGGTCGACGACCTCTCCCTCGGCTTCAATGCGGGTCCTGCCGCCGCCGCAGCCGGACCCACCGCCGGAATGTGGTCTAGCGCGACTAGGTCAATCAATTACCCCGAAATGGGGATGTTCGTGGTGGCGCCAGCTTCCTccttccaccaccaccaccaccaccaccagcaaccgccgccgccgccgcacGACCCCGTCATCGTGGCGGATTCCCTCAACCCCGCCACTGCACTCGGCGTCGGCGTCATCCCCCTCCTCTCCGCCACCCCATGTCTCGAATCCGACAACATCCTCGGAAATAGGACACGTGGCGGTGGAATTCAGTTTTGGCAAGACCAGCCGCAGCATCAAAGCCACTATATGAAGAAGCAGCAGGGTCTTCTTGACCATAATGATAACACTAATCCCGGCAATTTGGTTCATAACAGCGGCGGCGTAACCGCTTCGGGTACTAGTAGTGGGGGAACAACGTGCCAGGATTGTGGAAACCAGGCCAAGAAAGATTGTACAAACAGAAGGTGCAGGACTTGTTGCAAAAGTCGAGGTTTTGATTGCCCTACCCATGTTAAGAGCACATGGGTCCCCGCTGCACGCCGGAGAGAGCGCCAGCTCATGACGCCGGCCACGGCGGCGGTTGCCGGGTCTAGTGGTTCAACTTCTGGGACCAAGAAACCTAGGCTCATTGCTTCACAAACTACAACAACTTCTCATACTTCTACTTCTAACACCACTCCTCCTAGGAGCTTTGACACTAGCTCTAGCCATCAAGATGCGGGTTTCAAGGAGTCTTTACCTGGGCAAGTACGTGCACCTGCGGTTTTCAAGTGTGTTAGAGTGACGGCGGTGGAGGATGGGCAAGATGAGTATGCGTATCAGGCTGTGGTGAGGATTGGAGGCCACGTGTTCAAAGGGTTTCTTTATGATCAAGGGGTTGAGAGTAAGGATGTGTGTCCTAATCTATCTGAGTTGCATTTGGGTGGTGGAAGTGGAAGTGGAGggagtggtggtggtggggcgGGGAGAAATGGGgtttcatcttcttctccaaTGATGGATCCTTCTGATGTTTATGCAGCTTCGGGTGGAGGGTTACTAGGGGGTTCTTCAGCATATGGTAATGCAATGAATTGA 1467 0.4963 MTATERSCMHAPFRAGLRRKWCRYSGVRIAQRAESVPHAPSPQVMSGVIPIYPSTVHPFLLTVAILKLNILIVSDWRNQALSVVATTRRLPSDSGAFADWAASTSSSGGRAVPVDDLSLGFNAGPAAAAAGPTAGMWSSATRSINYPEMGMFVVAPASSFHHHHHHHQQPPPPPHDPVIVADSLNPATALGVGVIPLLSATPCLESDNILGNRTRGGGIQFWQDQPQHQSHYMKKQQGLLDHNDNTNPGNLVHNSGGVTASGTSSGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTPATAAVAGSSGSTSGTKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVRIGGHVFKGFLYDQGVESKDVCPNLSELHLGGGSGSGGSGGGGAGRNGVSSSSPMMDPSDVYAASGGGLLGGSSAYGNAMN 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3323 488 MobiDBLite consensus disorder prediction 317 376 - -
Ssu6g3323 488 MobiDBLite consensus disorder prediction 225 278 - -
Ssu6g3323 488 MobiDBLite consensus disorder prediction 160 181 - -
Ssu6g3323 488 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 376 423 IPR006511 -
Ssu6g3323 488 MobiDBLite consensus disorder prediction 440 464 - -
Ssu6g3323 488 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 148 488 IPR007818 GO:0003700|GO:0006355
Ssu6g3323 488 MobiDBLite consensus disorder prediction 321 372 - -
Ssu6g3323 488 Pfam Domain of unknown function (DUF702) 267 424 - -
Ssu6g3323 488 MobiDBLite consensus disorder prediction 225 277 - -
Ssu6g3323 488 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 269 311 IPR006510 -
Ssu6g3323 488 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 148 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3323 Ssu-Chr6 75191288 75193901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3323 80 468 C2H2 Transcription Factor Family AT5G12330 51.054 7.67e-98 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ssu6g3323 DUF702 4.9e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3323 - - gsj:114385228 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3323 6 75191288 75193901 Ssu6g3323 6 75191288 75193901 ECH
Ssu9g0741 9 32571105 32575633 Ssu6g3323 6 75191288 75193901 PCT