Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3319 ATGGTGAACAATGGCAAACCTTCACCATTATTACtgccaccatcatcaccaccactattgccaTCGCCACCATTACTTACCCTTGTTATGCCCGCTGAATTAGATGTCCCTCCCTATGAAACAAATGAGCAAATGCAACCACAACTTGTTATGGTTGCACTTGTTAGGAGGCTTAGAGGGAGGCCACCTGGCTTAAAGAATAAGCCTAAACCAGTCTTAAAATTCTTAATCCCAACCACCTTCCGcttggaagaaaaagaggacTTTCTCAAACCTATGGTCCTAAATATTCCCGCTAGCATGGACGTTGTCGATGCCATCATTGACTTTGCTTGCAACCGAGATGTCAGCATTATGGTGTATAATGCTTCGGGTCCCATCTCTAAAGTTACCCTTTGCAACCTTTTCGACCATTGCCATGATATGTTCCTCCAGGGAAACTTGCACATGTTGTCTTTCTCAGGCTTCTAA 471 0.3928 MVNNGKPSPLLLPPSSPPLLPSPPLLTLVMPAELDVPPYETNEQMQPQLVMVALVRRLRGRPPGLKNKPKPVLKFLIPTTFRLEEKEDFLKPMVLNIPASMDVVDAIIDFACNRDVSIMVYNASGPISKVTLCNLFDHCHDMFLQGNLHMLSFSGF 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3319 156 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 156 IPR014476 GO:0003680
Ssu6g3319 156 Pfam Plants and Prokaryotes Conserved (PCC) domain 91 155 IPR005175 -
Ssu6g3319 156 ProSiteProfiles PPC domain profile profile. 87 156 IPR005175 -
Ssu6g3319 156 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 43 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3319 Ssu-Chr6 75128047 75128517 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3319 52 132 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 38.272 5.01e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3319 - - ccaj:109810579 120.168