Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3318 ATGGCAAACAATGGCAAACCTTCACCATTATTACCGtcaccatcatcaccaccatcgccactaccattaccaccatCACTTACTCTTGCTATTCCCGCTCAATTAGATGTCCCTCCACACGAATCGAAAGAGCAAATGCAACCACAACCTGCTATGGTTGCACTTGCTAGGAGGCCTAGGGGGAGGCCACCTAGCTCAACGAATAAGCCTAAACTAGCCTTAAAATTCCCTATCCCTGCCACCTTCCTCTTGCAAGAAAAAGAGGACTTTCTCAAACCCATAGTCCTAAATATTCCTGCCGGCATGGACATTATTAATGCCATCATCGACTTTGCTTGCAACCGAGATGTCAGCATCGTGGTGCACAATGCTTCAGGGCCCATCTCTGCAGTTACCCTTTGCAACCTTTTCGACCATTCTCATGATTTGCTCCTCCAGGGAAACTTTCACATGTTGTCTCTCTTAGGCTTTTACACTAAGAGCCTTTCACCTTCACCCCCTTTTAACGTTCCCTATTCCTCCTTCACAATTCAAGTCTCAAGGACAAGGGATCCCAAACTCGTTGGCGGCCTTATTGGAGGCAAAGTTATTGCTATGGAACCTGTACAGAAATTTGTAGTGTGGATAAGTGATTGTCTGGCTACAGATTCAGACTTTGTAGCGAGAGTGTTTGATTTCATATGGGTGCTATGGAAGAGACGCAATACTTGGGTCTTCTCTCAACAGGAAACTCCTATTCTGCAGATATTTTCAATGAATGCTTCCTTCTCGAATTATCTTGAGCCTCCTAAGCAAAGTCCAGCGAGCACATCAATGTGCTGGAAACCACCTGATCCAAATGATATCCAAGTTAACCTGGATGCATTAGGTAGACGTGAAGTTGGCACTGGTATGGATGCAATCTTTAGAGATCATTTGGGCCAGCCTCTGGCAACACCACCACAATTTTATCCAATATGTTATGAACCAATGATTGCAGAAATTCTAGCTTTCAAGCGGTGCATTGGTAGCACACGAGTTTTGAACATACCACTTTTGAGACAGATTGCCAAATTCTTTTCAATTCCTGGGCTCGTAAGCACAGAGAGGACAAATCATATAACTCGGTGTTGCTACAGGAGTGTTCAAGTTTGA 1134 0.4268 MANNGKPSPLLPSPSSPPSPLPLPPSLTLAIPAQLDVPPHESKEQMQPQPAMVALARRPRGRPPSSTNKPKLALKFPIPATFLLQEKEDFLKPIVLNIPAGMDIINAIIDFACNRDVSIVVHNASGPISAVTLCNLFDHSHDLLLQGNFHMLSLLGFYTKSLSPSPPFNVPYSSFTIQVSRTRDPKLVGGLIGGKVIAMEPVQKFVVWISDCLATDSDFVARVFDFIWVLWKRRNTWVFSQQETPILQIFSMNASFSNYLEPPKQSPASTSMCWKPPDPNDIQVNLDALGRREVGTGMDAIFRDHLGQPLATPPQFYPICYEPMIAEILAFKRCIGSTRVLNIPLLRQIAKFFSIPGLVSTERTNHITRCCYRSVQV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3318 377 MobiDBLite consensus disorder prediction 1 51 - -
Ssu6g3318 377 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 42 202 IPR014476 GO:0003680
Ssu6g3318 377 Gene3D - 91 215 - -
Ssu6g3318 377 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 206 IPR005175 -
Ssu6g3318 377 MobiDBLite consensus disorder prediction 10 27 - -
Ssu6g3318 377 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 212 - -
Ssu6g3318 377 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 42 202 - -
Ssu6g3318 377 ProSiteProfiles PPC domain profile profile. 88 230 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3318 Ssu-Chr6 75100845 75103664 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3318 53 202 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 28.846 1.91e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3318 - - ccaj:109792018 166.392